View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_57 (Length: 305)
Name: NF19913_low_57
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_57 |
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Alignment Details
Target: chr8 (Bit Score: 115; Significance: 2e-58; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 8039636 - 8039762
Alignment:
| Q |
31 |
atatgccccgtatggcttagtgtgtttttgttcttgatttagactagttcgttgaatgtaaaatgacattgtttagatacattcacacaaaacttaattg |
130 |
Q |
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| T |
8039636 |
atatgtcccatatggcttagtgtgtttttgttcttgatttagactagttcgttgaatgtaaaatgacattgtttagatacattcacacaaaccttaattg |
8039735 |
T |
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| Q |
131 |
tccagcctatttgagaggcaaaatcac |
157 |
Q |
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| T |
8039736 |
tccagcctatttgagaggcaaaatcac |
8039762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 31 - 157
Target Start/End: Original strand, 8027522 - 8027648
Alignment:
| Q |
31 |
atatgccccgtatggcttagtgtgtttttgttcttgatttagactagttcgttgaatgtaaaatgacattgtttagatacattcacacaaaacttaattg |
130 |
Q |
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| T |
8027522 |
atatgtcccatatggcttagtgtgtttttgttcttgatttagattagttagttgaatgtaaaatgacatcgtttagatacattcacaaaaaacttaattg |
8027621 |
T |
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| Q |
131 |
tccagcctatttgagaggcaaaatcac |
157 |
Q |
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| T |
8027622 |
tccagccaatttgagagggaaaatcac |
8027648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 223 - 300
Target Start/End: Original strand, 8039828 - 8039906
Alignment:
| Q |
223 |
atgattggatattt-cttaattgaagatagaatttgaaatttttgactcaataatttctttttacttgttcatctcact |
300 |
Q |
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| T |
8039828 |
atgattggatattttcttaattgaagatagtatttgaaatttttgactcaacaatttatttttacttgttcatctcact |
8039906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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