View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_58 (Length: 301)
Name: NF19913_low_58
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 55825418 - 55825714
Alignment:
| Q |
1 |
caagttctagctttttctctgcttcttcagccgctgctcgggatgcttcagcttcttgcttcagttcctgagcctttctgctcatctcttcagcttctct |
100 |
Q |
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| T |
55825418 |
caagttctagctttttctctgcttcttcagccgctgctcgggatgcttcagcttcttgcttcagttcctgagcctttctgctcatctcttcagcttctct |
55825517 |
T |
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| Q |
101 |
ttttgcatcttctgtctccgattgtagcttcgggattttacaacttttcatgtagaaaaaacattggcatccccggtacctggctgaggccccgcctctt |
200 |
Q |
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| T |
55825518 |
ttttgcatcttctgtctccgattgtagcttctggattttacaacttttcatgtag--aaaacattggcatccacggtacctggctgaggccccgcctctt |
55825615 |
T |
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| Q |
201 |
ctgcgctcttttgcaattcaccagtgaggttaaaagcaagaacttctgctgcttgtttcttatccttaagttcatcttgctctttcttcacttgtttca |
299 |
Q |
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| T |
55825616 |
ctgcgctcttttgcaattcaccagtgaggttaaaagcaagaacttctgctgcttgtttcttatccttaagttcatcttgctctttcttcacttgtttca |
55825714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 56149563 - 56149267
Alignment:
| Q |
1 |
caagttctagctttttctctgcttcttcagccgctgctcgggatgcttcagcttcttgcttcagttcctgagcctttctgctcatctcttcagcttctct |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
56149563 |
caagttctagctttttctctgcttcttcagccgctgctcgggatgcttcagcttcttgcttcagttcctgagcctttctgctcatctcttctgcttctct |
56149464 |
T |
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| Q |
101 |
ttttgcatcttctgtctccgattgtagcttcgggattttacaacttttcatgtagaaaaaacattggcatccccggtacctggctgaggccccgcctctt |
200 |
Q |
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| T |
56149463 |
ttttgcatcttctgtctccgattgtagcttctggattttacaacttttcatgtag--aaaacattggcatccacggtacctggctgaggccccgcctctt |
56149366 |
T |
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| Q |
201 |
ctgcgctcttttgcaattcaccagtgaggttaaaagcaagaacttctgctgcttgtttcttatccttaagttcatcttgctctttcttcacttgtttca |
299 |
Q |
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| T |
56149365 |
ctgcgctcttttgcatttcaccagtgaggttaaaagcaagaacttctgctgcttgtttcttatccttaagttcatcttgctctttcttcacttgtttca |
56149267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 9883816 - 9883755
Alignment:
| Q |
235 |
agcaagaacttctgctgcttgtttcttatccttaagttcatcttgctctttcttcacttgtt |
296 |
Q |
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||||||| |||| |||||||||| ||| |||||||| || ||||| |||||||||||||||| |
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| T |
9883816 |
agcaagagcttccgctgcttgttccttctccttaagctcctcttgttctttcttcacttgtt |
9883755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 118
Target Start/End: Complemental strand, 9884004 - 9883934
Alignment:
| Q |
48 |
tcagcttcttgcttcagttcctgagcctttctgctcatctcttcagcttctctttttgcatcttctgtctc |
118 |
Q |
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||||||||||| |||||||||||||| || | ||||||||||| ||||| || |||||| ||||||||| |
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| T |
9884004 |
tcagcttcttgtttcagttcctgagctttcattctcatctcttcttcttcttttcttgcattttctgtctc |
9883934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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