View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_59 (Length: 300)
Name: NF19913_low_59
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_59 |
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Alignment Details
Target: chr8 (Bit Score: 102; Significance: 1e-50; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 45463297 - 45463188
Alignment:
| Q |
1 |
ctcctcagatcatgatttggttcaccatacctcccctcaagatggtctcttattttccctgaagatggctgcagctggaactttctttcttagagagtag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45463297 |
ctcctcagatcatgatttggttcaccatacctcccctcgagatggtttcttattttccctgaagatggctgcagctggaactttctttcttagagagtag |
45463198 |
T |
|
| Q |
101 |
tttgtagttg |
110 |
Q |
| |
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|||||||||| |
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| T |
45463197 |
tttgtagttg |
45463188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 185 - 300
Target Start/End: Complemental strand, 45463007 - 45462892
Alignment:
| Q |
185 |
tttgttgtactatgtgtatatatcatatgacctttaattttgtactgcgtannnnnnnacatgcatgaattgatgtcttgcatattttttgtgatttaaa |
284 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45463007 |
tttgttgtactatgtgtatatatcatatgacctttaattttgtactgcgtataattttacatgcatgaattgatgtcttgcatattttttatgatttaaa |
45462908 |
T |
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| Q |
285 |
attactattggtgtat |
300 |
Q |
| |
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|||||||||||||||| |
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| T |
45462907 |
attactattggtgtat |
45462892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 38323874 - 38323979
Alignment:
| Q |
1 |
ctcctcagatcatgatttggttcaccatacctcccctcaagatggtctcttattttccctgaagatggctgcagctggaactttctttcttagagagtag |
100 |
Q |
| |
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||||||| || ||||||||||| | ||| ||||||||| ||||||| | |||| | |||||||||| | ||||| || |||||||||| |||||||||| |
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| T |
38323874 |
ctcctcatatgatgatttggtttatcatgcctcccctccagatggttttttatatcccctgaagatcgatgcagttgagactttctttcctagagagtag |
38323973 |
T |
|
| Q |
101 |
tttgta |
106 |
Q |
| |
|
|||||| |
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|
| T |
38323974 |
tttgta |
38323979 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 45463170 - 45463138
Alignment:
| Q |
126 |
cttccgttcttttctttactcttttgcattgta |
158 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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|
| T |
45463170 |
cttccgttcttttctttactcttttgcattgta |
45463138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 188
Target Start/End: Complemental strand, 45463049 - 45463018
Alignment:
| Q |
157 |
tatctatttattgttaacatgataatgctttg |
188 |
Q |
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|||||||||||||||||||||||||||||||| |
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|
| T |
45463049 |
tatctatttattgttaacatgataatgctttg |
45463018 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 29109200 - 29109112
Alignment:
| Q |
1 |
ctcctcagatcatgatttggttcaccatacctcccctcaagatggtctcttattttccctgaagatggctgcagctggaactttctttc |
89 |
Q |
| |
|
|||||||||| ||||| ||||| ||||| ||||||||| |||||||||||| | | |||||||||||| ||||||||| |||||||||| |
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| T |
29109200 |
ctcctcagataatgatatggtttaccatgcctcccctctagatggtctcttgtatcccctgaagatgggtgcagctgggactttctttc |
29109112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 29076035 - 29075947
Alignment:
| Q |
1 |
ctcctcagatcatgatttggttcaccatacctcccctcaagatggtctcttattttccctgaagatggctgcagctggaactttctttc |
89 |
Q |
| |
|
||||| |||| ||||| ||||| ||||| ||||||||| |||||||||||| | | |||||||||||| ||||||||| |||||||||| |
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| T |
29076035 |
ctcctaagataatgatatggtttaccatgcctcccctctagatggtctcttgtatcccctgaagatgggtgcagctgggactttctttc |
29075947 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 46688752 - 46688857
Alignment:
| Q |
1 |
ctcctcagatcatgatttggttcaccatacctcccctcaagatggtctcttattttccctgaagatggctgcagctggaactttctttcttagagagtag |
100 |
Q |
| |
|
||||||| |||||||||||||||||||| || ||||| |||||||||||| |||||| |||||| ||||| ||| |||||| ||| | ||||||| |
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| T |
46688752 |
ctcctcatatcatgatttggttcaccatgccacccctttgaatggtctcttatattccctaaagatgaatgcagttgggactttcattcctgaagagtag |
46688851 |
T |
|
| Q |
101 |
tttgta |
106 |
Q |
| |
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|||||| |
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|
| T |
46688852 |
tttgta |
46688857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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