View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19913_low_60 (Length: 299)

Name: NF19913_low_60
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19913_low_60
NF19913_low_60
[»] chr2 (4 HSPs)
chr2 (1-281)||(38355899-38356182)
chr2 (247-281)||(37411256-37411290)
chr2 (247-281)||(21616775-21616809)
chr2 (247-279)||(21782832-21782864)
[»] chr7 (3 HSPs)
chr7 (245-281)||(22602722-22602758)
chr7 (247-279)||(2424627-2424659)
chr7 (247-279)||(29787383-29787415)
[»] scaffold0123 (1 HSPs)
scaffold0123 (247-281)||(44537-44571)
[»] chr8 (3 HSPs)
chr8 (247-281)||(14134712-14134746)
chr8 (247-281)||(34897098-34897132)
chr8 (247-280)||(3025564-3025597)
[»] chr6 (7 HSPs)
chr6 (247-281)||(7265605-7265639)
chr6 (247-281)||(9025506-9025540)
chr6 (247-281)||(11591882-11591916)
chr6 (247-281)||(13360384-13360418)
chr6 (247-281)||(19040365-19040399)
chr6 (247-281)||(26562702-26562736)
chr6 (247-279)||(31579239-31579271)
[»] chr5 (6 HSPs)
chr5 (247-281)||(6471901-6471935)
chr5 (247-281)||(24273042-24273076)
chr5 (247-281)||(24389138-24389172)
chr5 (247-281)||(41091269-41091303)
chr5 (247-280)||(23016002-23016035)
chr5 (247-280)||(28588687-28588720)
[»] chr4 (7 HSPs)
chr4 (247-281)||(903935-903969)
chr4 (247-281)||(22440612-22440646)
chr4 (247-281)||(36635337-36635371)
chr4 (247-280)||(8423731-8423764)
chr4 (248-281)||(40613464-40613497)
chr4 (247-279)||(16189722-16189754)
chr4 (245-273)||(30522935-30522963)
[»] chr3 (4 HSPs)
chr3 (247-281)||(11658828-11658862)
chr3 (250-282)||(10690273-10690305)
chr3 (247-279)||(11251991-11252023)
chr3 (245-281)||(29112292-29112328)
[»] chr1 (11 HSPs)
chr1 (247-281)||(1864892-1864926)
chr1 (247-281)||(7918223-7918257)
chr1 (247-281)||(19324575-19324609)
chr1 (247-281)||(25098567-25098601)
chr1 (247-281)||(25361899-25361933)
chr1 (247-281)||(40181884-40181918)
chr1 (247-281)||(44482243-44482277)
chr1 (247-280)||(34298449-34298482)
chr1 (247-280)||(36878474-36878507)
chr1 (249-281)||(10233268-10233300)
chr1 (249-281)||(34371728-34371760)
[»] scaffold0044 (1 HSPs)
scaffold0044 (247-280)||(53193-53226)


Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 281
Target Start/End: Complemental strand, 38356182 - 38355899
Alignment:
Q  1 agtctgcaactgcaacatacatccaagataaagatgggtctctcattacaggtaatttttagagctatcaaatgaactacgtaaatgagtaaaatcggct 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  38356182 agtctgcaactgcaacatacatccaagataaagatgggtctctcattacaggtaatttttagagctgtcaaatgaactacgtaaatgagtaaaatcggct 38356083  T
Q  101 cggcccatttgatattagtctacatattatttagccaagcccaactactgtgggccggataaaaaacccaagtcgttttaggcttgtgctg----taaag 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||    
T  38356082 cggcccatttgatattagtctacatattatttagccaagcccaactactgtgggccggataaaaaacccaagtcgttttaggcttgtgctgtaaataaag 38355983  T
Q  197 cacggatacgacagacacatacactagacatgaca--gacatgctgacagttatttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||   ||||||||||||||||| ||||  | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38355982 cacggatacg---gacacatacactagacacgacattgtcatgctgacagttatttgagaaaatcacataattcagtgtgattatat 38355899  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 37411290 - 37411256
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    |||||||||||||||||||||||||||||||||||    
T  37411290 atttgagaaaatcacataattcagtgtgattatat 37411256  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 21616775 - 21616809
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  21616775 atttgagaaaatcacataattcagtgtaattatat 21616809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 21782864 - 21782832
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattat 279  Q
    ||||||||||||||||||||||||||| |||||    
T  21782864 atttgagaaaatcacataattcagtgtaattat 21782832  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 22602758 - 22602722
Alignment:
Q  245 ttatttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||||| |||||||    
T  22602758 ttatttgagaaaatcacataattcagtgtaattatat 22602722  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 2424627 - 2424659
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattat 279  Q
    ||||||||||||||||||||||||||| |||||    
T  2424627 atttgagaaaatcacataattcagtgtaattat 2424659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 29787415 - 29787383
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattat 279  Q
    ||||||||||||||||||||||||||| |||||    
T  29787415 atttgagaaaatcacataattcagtgtaattat 29787383  T

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Target: scaffold0123 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 44571 - 44537
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  44571 atttgagaaaatcacataattcagtgtaattatat 44537  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 14134712 - 14134746
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  14134712 atttgagaaaatcacataattcagtgtaattatat 14134746  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 34897098 - 34897132
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  34897098 atttgagaaaatcacataattcagtgtaattatat 34897132  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Original strand, 3025564 - 3025597
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattata 280  Q
    ||||||||||||||||||||||||||| ||||||    
T  3025564 atttgagaaaatcacataattcagtgtaattata 3025597  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 7265639 - 7265605
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  7265639 atttgagaaaatcacataattcagtgtaattatat 7265605  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 9025540 - 9025506
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  9025540 atttgagaaaatcacataattcagtgtaattatat 9025506  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 11591916 - 11591882
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  11591916 atttgagaaaatcacataattcagtgtaattatat 11591882  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 13360418 - 13360384
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  13360418 atttgagaaaatcacataattcagtgtaattatat 13360384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 19040365 - 19040399
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  19040365 atttgagaaaatcacataattcagtgtaattatat 19040399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 26562702 - 26562736
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  26562702 atttgagaaaatcacataattcagtgtaattatat 26562736  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 31579271 - 31579239
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattat 279  Q
    ||||||||||||||||||||||||||| |||||    
T  31579271 atttgagaaaatcacataattcagtgtaattat 31579239  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 6471935 - 6471901
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  6471935 atttgagaaaatcacataattcagtgtaattatat 6471901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 24273076 - 24273042
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  24273076 atttgagaaaatcacataattcagtgtaattatat 24273042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 24389138 - 24389172
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  24389138 atttgagaaaatcacataattcagtgtaattatat 24389172  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 41091303 - 41091269
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  41091303 atttgagaaaatcacataattcagtgtaattatat 41091269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Complemental strand, 23016035 - 23016002
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattata 280  Q
    ||||||||||||||||||||||||||| ||||||    
T  23016035 atttgagaaaatcacataattcagtgtaattata 23016002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Complemental strand, 28588720 - 28588687
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattata 280  Q
    ||||||||||||||||||||||||||| ||||||    
T  28588720 atttgagaaaatcacataattcagtgtaattata 28588687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 903935 - 903969
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  903935 atttgagaaaatcacataattcagtgtaattatat 903969  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 22440646 - 22440612
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  22440646 atttgagaaaatcacataattcagtgtaattatat 22440612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 36635337 - 36635371
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  36635337 atttgagaaaatcacataattcagtgtaattatat 36635371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Complemental strand, 8423764 - 8423731
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattata 280  Q
    ||||||||||||||||||||||||||| ||||||    
T  8423764 atttgagaaaatcacataattcagtgtaattata 8423731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 281
Target Start/End: Original strand, 40613464 - 40613497
Alignment:
Q  248 tttgagaaaatcacataattcagtgtgattatat 281  Q
    |||||||||||||||||||||||||| |||||||    
T  40613464 tttgagaaaatcacataattcagtgtaattatat 40613497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 16189722 - 16189754
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattat 279  Q
    ||||||||||||||||||||||||||| |||||    
T  16189722 atttgagaaaatcacataattcagtgtaattat 16189754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 273
Target Start/End: Complemental strand, 30522963 - 30522935
Alignment:
Q  245 ttatttgagaaaatcacataattcagtgt 273  Q
    |||||||||||||||||||||||||||||    
T  30522963 ttatttgagaaaatcacataattcagtgt 30522935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 11658828 - 11658862
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||| |||||||||||||||||||||    
T  11658828 atttgagaaaatcgcataattcagtgtgattatat 11658862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 282
Target Start/End: Complemental strand, 10690305 - 10690273
Alignment:
Q  250 tgagaaaatcacataattcagtgtgattatatt 282  Q
    |||||||||||||||||||||||| ||||||||    
T  10690305 tgagaaaatcacataattcagtgtaattatatt 10690273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 279
Target Start/End: Original strand, 11251991 - 11252023
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattat 279  Q
    ||||||||||||||||||||||||||| |||||    
T  11251991 atttgagaaaatcacataattcagtgtaattat 11252023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 281
Target Start/End: Complemental strand, 29112328 - 29112292
Alignment:
Q  245 ttatttgagaaaatcacataattcagtgtgattatat 281  Q
    |||||||||||||||| |||||||||||| |||||||    
T  29112328 ttatttgagaaaatcatataattcagtgtaattatat 29112292  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 1864926 - 1864892
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  1864926 atttgagaaaatcacataattcagtgtaattatat 1864892  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 7918257 - 7918223
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  7918257 atttgagaaaatcacataattcagtgtaattatat 7918223  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 19324575 - 19324609
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  19324575 atttgagaaaatcacataattcagtgtaattatat 19324609  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Complemental strand, 25098601 - 25098567
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  25098601 atttgagaaaatcacataattcagtgtaattatat 25098567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 25361899 - 25361933
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  25361899 atttgagaaaatcacataattcagtgtaattatat 25361933  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 40181884 - 40181918
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  40181884 atttgagaaaatcacataattcagtgtaattatat 40181918  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 247 - 281
Target Start/End: Original strand, 44482243 - 44482277
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||||| |||||||    
T  44482243 atttgagaaaatcacataattcagtgtaattatat 44482277  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Original strand, 34298449 - 34298482
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattata 280  Q
    ||||||||||||||||||||||||||| ||||||    
T  34298449 atttgagaaaatcacataattcagtgtaattata 34298482  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Original strand, 36878474 - 36878507
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattata 280  Q
    ||||||||||||||||||||||||||| ||||||    
T  36878474 atttgagaaaatcacataattcagtgtaattata 36878507  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 10233268 - 10233300
Alignment:
Q  249 ttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||| |||||||    
T  10233268 ttgagaaaatcacataattcagtgtaattatat 10233300  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 281
Target Start/End: Original strand, 34371728 - 34371760
Alignment:
Q  249 ttgagaaaatcacataattcagtgtgattatat 281  Q
    ||||||||||||||||||||||||| |||||||    
T  34371728 ttgagaaaatcacataattcagtgtaattatat 34371760  T

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Target: scaffold0044 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 280
Target Start/End: Original strand, 53193 - 53226
Alignment:
Q  247 atttgagaaaatcacataattcagtgtgattata 280  Q
    ||||||||||||||||||||||||||| ||||||    
T  53193 atttgagaaaatcacataattcagtgtaattata 53226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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