View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_62 (Length: 287)
Name: NF19913_low_62
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_62 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 7 - 272
Target Start/End: Original strand, 23031345 - 23031610
Alignment:
| Q |
7 |
ttgaagcttcaattctatgcctaataacccaataactcatagtacccaatgtagtagccattatggtagtcccaataatagttaccccaattgcaagcca |
106 |
Q |
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| T |
23031345 |
ttgaagcttcaattctatgcctaataacccaataactcatagtacccaatgtagtagccattatggtagtcccaataatagttaccccaattgcaagcca |
23031444 |
T |
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| Q |
107 |
tctttgttttttacccacaactaaaaatgacaaagccaaaaatgacacagatataagcacacaagctacccacattagtttgttaataatagccatcatt |
206 |
Q |
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| T |
23031445 |
tctttgttttttccccacaactaaaaatgacaaagccaaaaatgacacagatataagcacacaagctacccacattagtttgttaataatagccatcatt |
23031544 |
T |
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| Q |
207 |
tgtttctttgctttgctttcaacaacaactattgatgtttgaaccaccacaaccgcgagggagatg |
272 |
Q |
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| T |
23031545 |
tgtttctttgctttgctttcaacaacaactattgatgtttgaaccaccacaaccgcgagggagatg |
23031610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 15 - 259
Target Start/End: Original strand, 41064919 - 41065163
Alignment:
| Q |
15 |
tcaattctatgcctaataacccaataactcatagtacccaatgtagtagccattatggtagtcccaataatagttaccccaattgcaagccatctttgtt |
114 |
Q |
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| T |
41064919 |
tcaattcgatgcttaatgacccaataacacatagttcccaaagttgtagccattatagttgctcctataatggtaacaaaaattgccaaccatttttctt |
41065018 |
T |
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| Q |
115 |
ttttacccacaactaaaaatgacaaagccaaaaatgacacagatataagcacacaagctacccacattagtttgttaataatagccatcatttgtttctt |
214 |
Q |
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| T |
41065019 |
cctttccaacaacaacaaatgacaatgctaaaaatgccacagaaataagcacacaagccaaccacattagcttattaattatagccgccatttgtttctt |
41065118 |
T |
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| Q |
215 |
tgctttgctttcaacaacaactattgatgtttgaaccaccacaac |
259 |
Q |
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| T |
41065119 |
tgctttgctttcgataacaacaaccgaagtttgaacaaccacaac |
41065163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 228
Target Start/End: Original strand, 40420534 - 40420615
Alignment:
| Q |
147 |
aatgacacagatataagcacacaagctacccacattagtttgttaataatagccatcatttgtttctttgctttgctttcaa |
228 |
Q |
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| T |
40420534 |
aatgccacagaaattaacacacatgctatccacattaacttgtttataacagccgtcatttgtttctttgcttccctttcaa |
40420615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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