View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19913_low_64 (Length: 276)

Name: NF19913_low_64
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19913_low_64
NF19913_low_64
[»] chr7 (11 HSPs)
chr7 (1-260)||(42094192-42094451)
chr7 (27-161)||(101251-101385)
chr7 (43-146)||(25690722-25690825)
chr7 (108-160)||(30279153-30279205)
chr7 (27-118)||(16780767-16780858)
chr7 (61-135)||(35851951-35852025)
chr7 (23-141)||(41195677-41195795)
chr7 (70-161)||(5815074-5815165)
chr7 (27-165)||(34953827-34953970)
chr7 (72-127)||(48078612-48078667)
chr7 (43-161)||(22600649-22600767)
[»] chr4 (8 HSPs)
chr4 (26-158)||(40423278-40423410)
chr4 (29-136)||(37397937-37398044)
chr4 (71-163)||(24672976-24673068)
chr4 (21-92)||(43115575-43115646)
chr4 (69-122)||(79515-79568)
chr4 (96-160)||(43115563-43115627)
chr4 (23-200)||(24672639-24672816)
chr4 (27-108)||(25844272-25844353)
[»] chr3 (6 HSPs)
chr3 (25-161)||(12767288-12767424)
chr3 (51-115)||(25258076-25258140)
chr3 (69-108)||(40413446-40413485)
chr3 (27-157)||(581019-581148)
chr3 (72-113)||(54905139-54905180)
chr3 (71-127)||(52205031-52205086)
[»] chr8 (10 HSPs)
chr8 (29-159)||(10340211-10340341)
chr8 (25-160)||(559941-560077)
chr8 (70-157)||(37616263-37616350)
chr8 (61-142)||(34273110-34273191)
chr8 (43-142)||(38924404-38924503)
chr8 (69-159)||(29204635-29204725)
chr8 (23-58)||(34273106-34273141)
chr8 (99-160)||(559925-559986)
chr8 (28-108)||(8238741-8238821)
chr8 (108-144)||(32049084-32049120)
[»] chr2 (11 HSPs)
chr2 (70-159)||(15404948-15405037)
chr2 (26-162)||(14442085-14442221)
chr2 (19-79)||(33710558-33710618)
chr2 (78-165)||(37028182-37028269)
chr2 (22-88)||(12670751-12670817)
chr2 (104-158)||(18694432-18694486)
chr2 (23-89)||(23465778-23465844)
chr2 (118-160)||(30481656-30481698)
chr2 (96-157)||(33710551-33710612)
chr2 (61-121)||(15538958-15539018)
chr2 (44-144)||(34557304-34557404)
[»] chr5 (4 HSPs)
chr5 (26-139)||(35631466-35631579)
chr5 (56-114)||(14105977-14106035)
chr5 (29-127)||(23311750-23311848)
chr5 (28-165)||(18398519-18398656)
[»] chr1 (6 HSPs)
chr1 (27-91)||(34062637-34062701)
chr1 (99-157)||(39126963-39127021)
chr1 (71-144)||(32191126-32191199)
chr1 (72-160)||(25484980-25485068)
chr1 (69-142)||(12082182-12082255)
chr1 (73-158)||(34123137-34123222)


Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 42094451 - 42094192
Alignment:
Q  1 tgttcttctctcttttaaacgttcggcatttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccg 100  Q
    |||||||||||||||||||||||  ||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||| |||||||||    
T  42094451 tgttcttctctcttttaaacgttttgcatttttcagcgtgaattaactcatgttaacatgtttaaaaacggttcaatcactttttaagtcaggttaaccg 42094352  T
Q  101 gtcttaaacgtgtcaacgtgagttaacccacgctgaaaaatgtcaaacatgagttaactcctgctaagataacggaatggacagttttgaaatggagaaa 200  Q
    |||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  42094351 gtcttaaaagtgtcaacgtgagttaacccatgctgaaaaatgtcaaacatgaattaactcctgctaagataagggaatggacagttttgaaatggagaaa 42094252  T
Q  201 gtaattttccaaaaatataggccattgttgttggaatttagatgcttttttgcacaatac 260  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  42094251 gtaattttccaaaaatataggccattgttgttggaatttggatgcttttttgcacaatac 42094192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 161
Target Start/End: Complemental strand, 101385 - 101251
Alignment:
Q  27 catttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaa 126  Q
    ||||||||||||  | ||||||||||||  ||  ||| ||| | |||||||||||||||||||| ||| ||||| ||||||| |||||| ||||||||||    
T  101385 catttttcagcggtagttaactcatgctagcactttttagatcagttcaatcactttttaagtcaggtcaaccgatcttaaaagtgtcagcgtgagttaa 101286  T
Q  127 cccacgctgaaaaatgtcaaacatgagttaactcc 161  Q
    |   |||||||||||| | | ||||||||||||||    
T  101285 ctaccgctgaaaaatgccgagcatgagttaactcc 101251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 25690722 - 25690825
Alignment:
Q  43 ttaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaacccacgctgaaaaatg 142  Q
    |||||||| |||||||  ||| ||| |||||||||||||||||||| ||| | ||||| ||||||| |||||| | ||| ||||| |||||||||||| |    
T  25690722 ttaactcacgctgacactttttagatcggttcaatcactttttaagccggttcaaccgatcttaaaagtgtcagcatgaattaactcacgctgaaaaaag 25690821  T
Q  143 tcaa 146  Q
    ||||    
T  25690822 tcaa 25690825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 108 - 160
Target Start/End: Complemental strand, 30279205 - 30279153
Alignment:
Q  108 acgtgtcaacgtgagttaacccacgctgaaaaatgtcaaacatgagttaactc 160  Q
    ||||||| |||||||||||| |||||||||||||||| ||| |||||||||||    
T  30279205 acgtgtctacgtgagttaactcacgctgaaaaatgtccaacttgagttaactc 30279153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 16780858 - 16780767
Alignment:
Q  27 catttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacg 118  Q
    ||||||||||| ||| |||||| | || | ||  ||||||| |||||||||||||||||||||||  | ||||| ||||||| |||||||||    
T  16780858 catttttcagcatgagttaacttacgcgggcacttttaagatcggttcaatcactttttaagtcgattcaaccgatcttaaaagtgtcaacg 16780767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 135
Target Start/End: Complemental strand, 35852025 - 35851951
Alignment:
Q  61 tttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaacccacgctg 135  Q
    ||||||| ||||||||||||||| |||||||| | ||||| ||||||| ||||||  |||||||||  |||||||    
T  35852025 tttaagatcggttcaatcactttctaagtcggttcaaccgatcttaaaagtgtcagtgtgagttaattcacgctg 35851951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 41195677 - 41195795
Alignment:
Q  23 tcggcatttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgag 122  Q
    ||||||||||| ||||| | |||||||| |||||||  ||||||   | |||||||||||||||||  || | ||| | ||||||| |||||||| ||||    
T  41195677 tcggcattttttagcgttagttaactcacgctgacacttttaaggttgattcaatcactttttaagctggttcaactgatcttaaaagtgtcaacttgag 41195776  T
Q  123 ttaacccacgctgaaaaat 141  Q
    |||||   |||||||||||    
T  41195777 ttaacttccgctgaaaaat 41195795  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 70 - 161
Target Start/End: Complemental strand, 5815165 - 5815074
Alignment:
Q  70 ggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaacccacgctgaaaaatgtcaaacatgagttaactcc 161  Q
    ||||||||||||||||||||| ||| ||||| ||||||| ||| ||| ||||||| ||   || |||||| ||  || ||||||||||||||    
T  5815165 ggttcaatcactttttaagtcaggtcaaccgatcttaaaagtgccaatgtgagtttactaccgttgaaaattgataagcatgagttaactcc 5815074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 165
Target Start/End: Complemental strand, 34953970 - 34953827
Alignment:
Q  27 catttttcagcgtgaattaactcatgctgacatgtttaagaacggttc-----aatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtga 121  Q
    ||||||||||||  | |||||||| |||||||  ||||||| |||||      ||||||||||||| |||  | ||||| |||| || ||||   | |||    
T  34953970 catttttcagcggtagttaactcacgctgacacttttaagatcggtttgatttaatcactttttaaatcgaatcaaccgatcttcaaagtgttggcatga 34953871  T
Q  122 gttaacccacgctgaaaaatgtcaaacatgagttaactcctgct 165  Q
    ||||||   |||||||||||||||| ||||||||||||||||||    
T  34953870 gttaactgccgctgaaaaatgtcaagcatgagttaactcctgct 34953827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 48078612 - 48078667
Alignment:
Q  72 ttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaac 127  Q
    ||||||||||||||||||||| | ||||| ||||||| ||| ||||| ||||||||    
T  48078612 ttcaatcactttttaagtcggttcaaccgatcttaaaagtgccaacgagagttaac 48078667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 22600649 - 22600767
Alignment:
Q  43 ttaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaacccacgctgaaaaatg 142  Q
    ||||||||  ||||||| ||||||| || |||||| |||||||||| ||| | ||||  ||||||  ||| |||| |||||||||  || |||||||||     
T  22600649 ttaactcacactgacatttttaagatcgattcaattactttttaagccggttcaaccaatcttaatagtgccaacatgagttaacttacactgaaaaata 22600748  T
Q  143 tcaaacatgagttaactcc 161  Q
    || |||  |||||||||||    
T  22600749 tcgaacgggagttaactcc 22600767  T

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Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 26 - 158
Target Start/End: Complemental strand, 40423410 - 40423278
Alignment:
Q  26 gcatttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagtta 125  Q
    |||||||| |||||||||||||||| |||||||  ||||||| |||||||||||||||||||||||| | |||   ||||||| |||||| | |||||||    
T  40423410 gcatttttaagcgtgaattaactcacgctgacaattttaagatcggttcaatcactttttaagtcggttcaacaaatcttaaaagtgtcagcatgagtta 40423311  T
Q  126 acccacgctgaaaaatgtcaaacatgagttaac 158  Q
    ||   || ||||||||||||| | |||||||||    
T  40423310 acttccgttgaaaaatgtcaagcgtgagttaac 40423278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 136
Target Start/End: Complemental strand, 37398044 - 37397937
Alignment:
Q  29 tttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaacc 128  Q
    |||||||| |||| |||||||| ||| |||| ||||||| |||||||||||||||||||||| | | ||||  |||||||| |  || |||||||||||     
T  37398044 tttttcagagtgagttaactcaggctaacatttttaagatcggttcaatcactttttaagtcagttcaaccaatcttaaacattccagcgtgagttaact 37397945  T
Q  129 cacgctga 136  Q
    ||| ||||    
T  37397944 cacactga 37397937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 71 - 163
Target Start/End: Complemental strand, 24673068 - 24672976
Alignment:
Q  71 gttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaacccacgctgaaaaatgtcaaacatgagttaactcctg 163  Q
    |||||||||||||||| ||||||| ||||  ||||||| ||| ||||||||||||||   |||| ||||||  ||| | ||||||||||||||    
T  24673068 gttcaatcactttttatgtcgggtcaaccaatcttaaaagtgccaacgtgagttaactaccgctaaaaaataccaagcgtgagttaactcctg 24672976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 92
Target Start/End: Original strand, 43115575 - 43115646
Alignment:
Q  21 gttcggcatttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgg 92  Q
    ||||| ||||||||||||||| ||||||||  ||||||  ||||||| ||||||||| | ||||||||||||    
T  43115575 gttcgacatttttcagcgtgagttaactcacactgacacttttaagatcggttcaataattttttaagtcgg 43115646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 122
Target Start/End: Complemental strand, 79568 - 79515
Alignment:
Q  69 cggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgag 122  Q
    |||||||||||||||||||||||||| ||| | ||||||| ||| |||||||||    
T  79568 cggttcaatcactttttaagtcgggtcaactgatcttaaaagtgacaacgtgag 79515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 96 - 160
Target Start/End: Complemental strand, 43115627 - 43115563
Alignment:
Q  96 aaccggtcttaaacgtgtcaacgtgagttaacccacgctgaaaaatgtcaaacatgagttaactc 160  Q
    ||||| ||||||| ||||||  |||||||||| |||||||||||||||| ||| | |||||||||    
T  43115627 aaccgatcttaaaagtgtcagtgtgagttaactcacgctgaaaaatgtcgaacttaagttaactc 43115563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 23 - 200
Target Start/End: Complemental strand, 24672816 - 24672639
Alignment:
Q  23 tcggcatttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgag 122  Q
    ||||||||||||||||  | |||||||| | || ||   || ||| || ||||||||||||||||||||| | ||||| |   ||| |||||||||||||    
T  24672816 tcggcatttttcagcggtagttaactcacgttggcactatttagatcgattcaatcactttttaagtcggataaaccgataaaaaaagtgtcaacgtgag 24672717  T
Q  123 ttaacccacgctgaaaaatgtcaaacatgagttaactcctgctaagataacggaatggacagttttgaaatggagaaa 200  Q
    |||||    |||||||||| || | | ||||| |||||| ||| ||  || ||||||  || |||||||| |||||||    
T  24672716 ttaactgttgctgaaaaatatcgagcgtgagtaaactcccgctgagtcaagggaatgagcaattttgaaagggagaaa 24672639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 27 - 108
Target Start/End: Complemental strand, 25844353 - 25844272
Alignment:
Q  27 catttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaa 108  Q
    ||||||||||  ||| ||||||||||||||||  |||||||  | ||||||| ||||||||| ||| | ||||| |||||||    
T  25844353 catttttcagtttgagttaactcatgctgacacttttaagattgattcaatcgctttttaagccggttcaaccgatcttaaa 25844272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 25 - 161
Target Start/End: Complemental strand, 12767424 - 12767288
Alignment:
Q  25 ggcatttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagtt 124  Q
    ||||||||||| | ||| |||||||| ||| |||  ||||||| || ||||||||||||||||||||| | ||||| ||||| | |||||| |||| |||    
T  12767424 ggcatttttcaacttgagttaactcacgctaacacttttaagatcgtttcaatcactttttaagtcggatcaaccgatcttagaagtgtcagcgtgggtt 12767325  T
Q  125 aacccacgctgaaaaatgtcaaacatgagttaactcc 161  Q
    ||  ||||||||||||||   ||| ||||||||||||    
T  12767324 aattcacgctgaaaaatgcggaacgtgagttaactcc 12767288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 115
Target Start/End: Complemental strand, 25258140 - 25258076
Alignment:
Q  51 tgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtca 115  Q
    ||||||||  ||||||| | |||||||||||||||||||||| | ||||| ||||||| ||||||    
T  25258140 tgctgacacttttaagatcagttcaatcactttttaagtcggttcaaccgatcttaaaagtgtca 25258076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 69 - 108
Target Start/End: Complemental strand, 40413485 - 40413446
Alignment:
Q  69 cggttcaatcactttttaagtcgggttaaccggtcttaaa 108  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  40413485 cggttcaatcactttttaagtcgggtcaaccgatcttaaa 40413446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 157
Target Start/End: Complemental strand, 581148 - 581019
Alignment:
Q  27 catttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaa 126  Q
    ||||||| ||||||| ||||||||  ||| ||  ||||||| | ||||||| |||||||||||| | | ||||| ||||||| ||  || ||||||||||    
T  581148 cattttttagcgtgagttaactcacactg-cacttttaagacccgttcaataactttttaagtctgttcaaccgatcttaaaagtaccagcgtgagttaa 581050  T
Q  127 cccacgctgaaaaatgtcaaacatgagttaa 157  Q
    | ||| |||| ||||| | ||| ||||||||    
T  581049 ctcacactgataaatgccgaacgtgagttaa 581019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 54905139 - 54905180
Alignment:
Q  72 ttcaatcactttttaagtcgggttaaccggtcttaaacgtgt 113  Q
    ||||||||||||||||||||| ||||||| ||||||| ||||    
T  54905139 ttcaatcactttttaagtcggtttaaccgatcttaaaagtgt 54905180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 52205086 - 52205031
Alignment:
Q  71 gttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaac 127  Q
    |||||||||||||| ||||||||| ||||| ||||||| |||||| | |||||||||    
T  52205086 gttcaatcactttt-aagtcgggtcaaccgatcttaaaagtgtcagcatgagttaac 52205031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 29 - 159
Target Start/End: Original strand, 10340211 - 10340341
Alignment:
Q  29 tttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaacc 128  Q
    ||||||||||||| ||||||||  ||||||  ||| ||| || |||||||| ||||||||| ||||   ||| ||||||| |||||| |||||||||||     
T  10340211 tttttcagcgtgagttaactcacactgacactttttagatcgattcaatcattttttaagttgggtcggccgatcttaaaagtgtcagcgtgagttaact 10340310  T
Q  129 cacgctgaaaaatgtcaaacatgagttaact 159  Q
    |||| ||||||||| ||| ||||||| ||||    
T  10340311 cacgttgaaaaatgccaagcatgagtcaact 10340341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 160
Target Start/End: Original strand, 559941 - 560077
Alignment:
Q  25 ggcatttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagtt 124  Q
    ||||||||||||||||| |||||||| |||||||| ||||||| || |||||| | ||||||||| || | ||||| | |||||  || || ||||||||    
T  559941 ggcatttttcagcgtgagttaactcacgctgacatttttaagaccgattcaattattttttaagttggttcaaccgattttaaaattgccagcgtgagtt 560040  T
Q  125 aacccacgctg-aaaaatgtcaaacatgagttaactc 160  Q
    ||| |||| || ||||||||||| | | |||||||||    
T  560041 aactcacgttgaaaaaatgtcaagcgtaagttaactc 560077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 70 - 157
Target Start/End: Complemental strand, 37616350 - 37616263
Alignment:
Q  70 ggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaacccacgctgaaaaatgtcaaacatgagttaa 157  Q
    ||||||||||  |||||||| || | ||||  ||||||| |||||| |||||||||||||||||||||||||||| ||| ||||||||    
T  37616350 ggttcaatcatcttttaagttggatcaaccaatcttaaaagtgtcagcgtgagttaacccacgctgaaaaatgtcgaacgtgagttaa 37616263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 61 - 142
Target Start/End: Complemental strand, 34273191 - 34273110
Alignment:
Q  61 tttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaacccacgctgaaaaatg 142  Q
    ||||||| ||||||||||||| |||||||||| | ||||| | ||||| |||||| ||||||||||  ||||||||||||||    
T  34273191 tttaagatcggttcaatcactgtttaagtcggttcaaccgattttaaaagtgtcagcgtgagttaattcacgctgaaaaatg 34273110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 142
Target Start/End: Original strand, 38924404 - 38924503
Alignment:
Q  43 ttaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaacccacgctgaaaaatg 142  Q
    ||||||| ||||| ||  ||||||| |||||||||||||||||||||||| | ||| | ||||||| ||| || |||||||||||   ||||||||||||    
T  38924404 ttaactcgtgctggcacttttaagatcggttcaatcactttttaagtcggttcaactgatcttaaaagtgacagcgtgagttaacttccgctgaaaaatg 38924503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 159
Target Start/End: Original strand, 29204635 - 29204725
Alignment:
Q  69 cggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaacccacgctgaaaaatgtcaaacatgagttaact 159  Q
    |||||||||||||||||||||||| | ||| | ||||||| ||| || ||| |||||||  ||||||||||||  | ||||| ||||||||    
T  29204635 cggttcaatcactttttaagtcggatcaactgatcttaaaagtgacagcgtaagttaacttacgctgaaaaataccgaacataagttaact 29204725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 23 - 58
Target Start/End: Original strand, 34273106 - 34273141
Alignment:
Q  23 tcggcatttttcagcgtgaattaactcatgctgaca 58  Q
    |||||||||||||||||||||||||||| |||||||    
T  34273106 tcggcatttttcagcgtgaattaactcacgctgaca 34273141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 160
Target Start/End: Complemental strand, 559986 - 559925
Alignment:
Q  99 cggtcttaaacgtgtcaacgtgagttaacccacgctgaaaaatgtcaaacatgagttaactc 160  Q
    ||||||||||  ||||| ||||||||||| |||||||||||||| ||  | |||||||||||    
T  559986 cggtcttaaaaatgtcagcgtgagttaactcacgctgaaaaatgccaggcgtgagttaactc 559925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 108
Target Start/End: Original strand, 8238741 - 8238821
Alignment:
Q  28 atttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaa 108  Q
    |||||||||||  | |||||||| |||||||  ||| ||| | ||||||||||||||| |||||| | ||||| |||||||    
T  8238741 atttttcagcggtagttaactcacgctgacactttttagatcagttcaatcacttttttagtcggatcaaccgatcttaaa 8238821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 108 - 144
Target Start/End: Original strand, 32049084 - 32049120
Alignment:
Q  108 acgtgtcaacgtgagttaacccacgctgaaaaatgtc 144  Q
    ||||||| |||||||||||| ||||||||||||||||    
T  32049084 acgtgtctacgtgagttaactcacgctgaaaaatgtc 32049120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 70 - 159
Target Start/End: Original strand, 15404948 - 15405037
Alignment:
Q  70 ggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaacccacgctgaaaaatgtcaaacatgagttaact 159  Q
    ||||||||||||||||||||||||| ||||| | ||||| |||||||||||||||||| |||  |||| || ||| || |||||||||||    
T  15404948 ggttcaatcactttttaagtcgggtcaaccgattttaaaagtgtcaacgtgagttaactcacagtgaataaagtcgaatatgagttaact 15405037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 162
Target Start/End: Original strand, 14442085 - 14442221
Alignment:
Q  26 gcatttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagtta 125  Q
    |||||| ||||||||||||| ||   |||||||  ||||||| | || ||||||||||||||| ||  | ||| | ||||||| |||  | |||||||||    
T  14442085 gcatttatcagcgtgaattatctttcgctgacacttttaagatcagtacaatcactttttaagccgattcaactgatcttaaaggtgctagcgtgagtta 14442184  T
Q  126 acccacgctgaaaaatgtcaaacatgagttaactcct 162  Q
    |||||| ||||||||| || |||  || |||||||||    
T  14442185 acccacactgaaaaatatcgaacgggaattaactcct 14442221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 33710558 - 33710618
Alignment:
Q  19 acgttcggcatttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatca 79  Q
    ||||||| ||||||||||||||| |||||| | |||||||  ||||||| |||||||||||    
T  33710558 acgttcgacatttttcagcgtgagttaacttacgctgacacttttaagatcggttcaatca 33710618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 165
Target Start/End: Original strand, 37028182 - 37028269
Alignment:
Q  78 cactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaacccacgctgaaaaatgtcaaacatgagttaactcctgct 165  Q
    |||||||||| |||||| ||||  | ||||| ||||||||||| ||||||   |||||||||||| | ||| |||||||||| |||||    
T  37028182 cactttttaaatcgggtcaaccatttttaaaagtgtcaacgtgtgttaactaccgctgaaaaatgccgaacgtgagttaacttctgct 37028269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 88
Target Start/End: Original strand, 12670751 - 12670817
Alignment:
Q  22 ttcggcatttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaag 88  Q
    |||| |||||| || ||||| |||||||| |||||||  ||||||| ||||||||||| ||||||||    
T  12670751 ttcgacattttgcaacgtgacttaactcacgctgacacttttaagatcggttcaatcaatttttaag 12670817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 158
Target Start/End: Complemental strand, 18694486 - 18694432
Alignment:
Q  104 ttaaacgtgtcaacgtgagttaacccacgctgaaaaatgtcaaacatgagttaac 158  Q
    ||||| |||||  ||||||||||| |||||||||||||||| | |||||||||||    
T  18694486 ttaaaagtgtctgcgtgagttaactcacgctgaaaaatgtccagcatgagttaac 18694432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 89
Target Start/End: Complemental strand, 23465844 - 23465778
Alignment:
Q  23 tcggcatttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaagt 89  Q
    ||||||||||||||||| | |||||| | | |||||  ||||||| ||||||||| |||||||||||    
T  23465844 tcggcatttttcagcgtaagttaacttacgatgacacttttaagatcggttcaattactttttaagt 23465778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 160
Target Start/End: Complemental strand, 30481698 - 30481656
Alignment:
Q  118 gtgagttaacccacgctgaaaaatgtcaaacatgagttaactc 160  Q
    |||||||||| |||||| ||||||||| |||||||||||||||    
T  30481698 gtgagttaactcacgctaaaaaatgtcgaacatgagttaactc 30481656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 33710612 - 33710551
Alignment:
Q  96 aaccggtcttaaacgtgtcaacgtgagttaacccacgctgaaaaatgtcaaacatgagttaa 157  Q
    ||||| ||||||| |||||| ||| ||||||| |||||||||||||||| ||| | ||||||    
T  33710612 aaccgatcttaaaagtgtcagcgtaagttaactcacgctgaaaaatgtcgaacgtaagttaa 33710551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 121
Target Start/End: Original strand, 15538958 - 15539018
Alignment:
Q  61 tttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtga 121  Q
    ||||||| ||||||||| |||||||||||||| | || || ||||||| |||||| |||||    
T  15538958 tttaagatcggttcaattactttttaagtcggttcaatcgatcttaaaagtgtcagcgtga 15539018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 44 - 144
Target Start/End: Complemental strand, 34557404 - 34557304
Alignment:
Q  44 taactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaacccacgctgaaaaatgt 143  Q
    ||||||| || ||||| ||||||| | ||||||||| ||||||| |||| | || || ||||||| |||     |||||||||| |||||||||||||||    
T  34557404 taactcacgccgacatttttaagatctgttcaatcattttttaaatcggttcaatcgatcttaaaagtgctggtgtgagttaactcacgctgaaaaatgt 34557305  T
Q  144 c 144  Q
    |    
T  34557304 c 34557304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 139
Target Start/End: Complemental strand, 35631579 - 35631466
Alignment:
Q  26 gcatttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagtta 125  Q
    ||||||||||||||||||||||||||||   ||  ||||||| ||||| |||| | ||||||||| | | ||||| ||||||| || ||| || ||||||    
T  35631579 gcatttttcagcgtgaattaactcatgcgtgcacttttaagatcggtttaatccccttttaagtcagctgaaccgatcttaaaagtatcagcgggagtta 35631480  T
Q  126 acccacgctgaaaa 139  Q
    |  |||||||||||    
T  35631479 attcacgctgaaaa 35631466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 14106035 - 14105977
Alignment:
Q  56 acatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtc 114  Q
    |||| ||||||| ||||||||||||||||||||| || || |||| ||||||| |||||    
T  14106035 acatttttaagatcggttcaatcactttttaagttggtttgaccgatcttaaaagtgtc 14105977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 23311750 - 23311848
Alignment:
Q  29 tttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaac 127  Q
    ||||| ||||||| |||||||| | ||  || ||||||| ||||| ||| | |||||||||| | | ||||  ||||||| ||||||||||||||||||    
T  23311750 ttttttagcgtgagttaactcacgttggtatttttaagatcggttaaattattttttaagtcagttcaaccaatcttaaaagtgtcaacgtgagttaac 23311848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 165
Target Start/End: Complemental strand, 18398656 - 18398519
Alignment:
Q  28 atttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaac 127  Q
    |||||||| ||||| |||||| |  ||||||  ||||||| ||||||| |||||||||||  ||| | ||||| ||||| |  | ||| |||||||||||    
T  18398656 atttttcaacgtgagttaacttacactgacacttttaagatcggttcattcactttttaaaccggttcaaccgatcttataattttcagcgtgagttaac 18398557  T
Q  128 ccacgctgaaaaatgtcaaacatgagttaactcctgct 165  Q
     ||  |||||||||| | | | ||||||||||| ||||    
T  18398556 tcagactgaaaaatgccgagcgtgagttaactcatgct 18398519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 34062637 - 34062701
Alignment:
Q  27 catttttcagcgtgaattaactcatgctgacatgtttaagaacggttcaatcactttttaagtcg 91  Q
    ||||||||||||||| | |||||| |||||||  ||||| | |||||||||||||||||||||||    
T  34062637 catttttcagcgtgagtgaactcacgctgacacttttaaaatcggttcaatcactttttaagtcg 34062701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 157
Target Start/End: Original strand, 39126963 - 39127021
Alignment:
Q  99 cggtcttaaacgtgtcaacgtgagttaacccacgctgaaaaatgtcaaacatgagttaa 157  Q
    |||||||||| |||||| ||||||||||| |||||||||||||||| | | ||||||||    
T  39126963 cggtcttaaaagtgtcagcgtgagttaactcacgctgaaaaatgtcgagcgtgagttaa 39127021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 144
Target Start/End: Complemental strand, 32191199 - 32191126
Alignment:
Q  71 gttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaacccacgctgaaaaatgtc 144  Q
    ||||||||| ||||||||| || | ||||| ||||||| ||| || |||||||||| | |||||||||||||||    
T  32191199 gttcaatcattttttaagttggttcaaccgatcttaaaagtgccagcgtgagttaatctacgctgaaaaatgtc 32191126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 160
Target Start/End: Original strand, 25484980 - 25485068
Alignment:
Q  72 ttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaacccacgctgaaaaatgtcaaacatgagttaactc 160  Q
    ||||||||||||||||| |   | || || ||||||| ||| || ||||||||||| ||||||| |||||||| ||| |||||||||||    
T  25484980 ttcaatcactttttaagccaattcaaacgatcttaaaagtggcagcgtgagttaactcacgctggaaaatgtcgaacgtgagttaactc 25485068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 69 - 142
Target Start/End: Original strand, 12082182 - 12082255
Alignment:
Q  69 cggttcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaacccacgctgaaaaatg 142  Q
    ||||||||||||||| |||||||||| ||||| ||||||| |||  | | ||||||||| || ||| |||||||    
T  12082182 cggttcaatcactttgtaagtcgggtcaaccgatcttaaaagtggtagcatgagttaactcatgcttaaaaatg 12082255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 158
Target Start/End: Complemental strand, 34123222 - 34123137
Alignment:
Q  73 tcaatcactttttaagtcgggttaaccggtcttaaacgtgtcaacgtgagttaacccacgctgaaaaatgtcaaacatgagttaac 158  Q
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T  34123222 tcaatcactttttaagctggttcaaccgattttaaaagtgtcagcgtgagttaacttccgctgaaaaatgtcgagcgtgagttaac 34123137  T

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