View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_7 (Length: 549)
Name: NF19913_low_7
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 532
Target Start/End: Original strand, 45604950 - 45605493
Alignment:
| Q |
1 |
tccaacaacaaataacatttagccacatgagaaatttgtaagttgaattttttggtgtgaaatatatatttaatgtataaaaagttatttgagtaaaata |
100 |
Q |
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| T |
45604950 |
tccaacaacaaataacatttagccacatgagaaatttgtaagttgaattttttggtgtgaaatatatatttaatgtataaaaagttatttcagtaaaata |
45605049 |
T |
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| Q |
101 |
tgaagttaaatttttggttataaaatatatttttaaagagtttaattatggtgcac-----atgtaaaactatattacagtcgaccaataatattctacc |
195 |
Q |
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| T |
45605050 |
tgaagctaaatttttggttataaaatatatttttaaagagtttaattatggtgcaccgacgatataaaactatattacagtcgaccaataatattctgcc |
45605149 |
T |
|
| Q |
196 |
acatcactattactt----ttaaaacagtttaattgaagtaaaactccaacattgtcagtctcttctattacgacgttgttggccgccattccctaccgc |
291 |
Q |
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|||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45605150 |
acatcactatcacttaattttaaaacagtttaattgaagtaaaactccaacattgtcggtctcttctattacgacgttgttggccgccattccctaccgc |
45605249 |
T |
|
| Q |
292 |
tttaacccacaagtcttagcatccttaaccttaaagacagtttttgttaagcaacagccttaaaagacaaagaatgattgttttattt-------aaaat |
384 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
45605250 |
tttaacccacaagccttagcatccttaaccttaaagacagtttttgttaagcaacagc----aaagacaaagaatgattgttttatttaaaattaaaaat |
45605345 |
T |
|
| Q |
385 |
aaaaaattgtctgagatggtatttcctggttgggtgtgaataaacacatatgagaactggatttggagagccagagtctatatcttagggataaaattga |
484 |
Q |
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| T |
45605346 |
taaaaattgtctgagatggtatttcatggttgggtgtgaataaacacatatgagaactgaatttggagagccagagtctatatcttagagataaaattga |
45605445 |
T |
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| Q |
485 |
acgttgttgttgttgcataagtgtgattccatcaatcatcaacatgta |
532 |
Q |
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| T |
45605446 |
acattgttgttgttgcataagtgtgattccatcaatcgtcaacatgta |
45605493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 123; Significance: 6e-63; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 332 - 518
Target Start/End: Complemental strand, 10120168 - 10119982
Alignment:
| Q |
332 |
tttttgttaagcaacagccttaaaagacaaagaatgattgttttatttaaaataaaaaattgtctgagatggtatttcctggttgggtgtgaataaacac |
431 |
Q |
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|||||||||||||||| |||| ||||||| ||||||||||||||||| |||| | |||||||| |||||||||||||| ||||||||||||| ||||||| |
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| T |
10120168 |
tttttgttaagcaacaaccttcaaagacacagaatgattgttttattaaaaaaataaaattgtgtgagatggtatttcatggttgggtgtgagtaaacac |
10120069 |
T |
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| Q |
432 |
atatgagaactggatttggagagccagagtctatatcttagggataaaattgaacgttgttgttgttgcataagtgtgattccatca |
518 |
Q |
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| T |
10120068 |
atatgagaactgaatttggagagccagagtctaaatcctatagatacaattgaacattgttgttgttgcataagtgtgattccatca |
10119982 |
T |
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