View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_73 (Length: 254)
Name: NF19913_low_73
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_73 |
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Alignment Details
Target: chr4 (Bit Score: 144; Significance: 8e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 23031091 - 23030847
Alignment:
| Q |
1 |
aacataatagaatgttgcaannnnnnnnatgttagaacgtaatagaaaataattaagtgattgattttgaggggataactaagtaattgataaaaataaa |
100 |
Q |
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| T |
23031091 |
aacataatagaatgttgcaattttttttatgttagaacgtaatagaaaataattaagtgattgattt--aggggataactaagtaattgataaaaataaa |
23030994 |
T |
|
| Q |
101 |
ttttattgttataatataa-nnnnnnnnggtagaaagtaatataaaataattgagtgattgcaaaagaaaaatataacaagtnnnnnnnnggtttaattg |
199 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
23030993 |
ttttattgttataatataatttttttttggtagaaagtaatataaaataattgagtgattgcaaaagaaaaatataacaagtaaaaaaaaagtttaattg |
23030894 |
T |
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| Q |
200 |
tatttttagtttccacaattctattttaggttcattttcttcgacat |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
23030893 |
tatttttagtttccacaattctattttaggttcattttttacgacat |
23030847 |
T |
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