View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19913_low_74 (Length: 253)

Name: NF19913_low_74
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19913_low_74
NF19913_low_74
[»] chr2 (2 HSPs)
chr2 (14-253)||(14128236-14128479)
chr2 (15-226)||(4259574-4259785)
[»] chr3 (4 HSPs)
chr3 (23-232)||(28727868-28728081)
chr3 (15-249)||(35544221-35544458)
chr3 (16-63)||(8966939-8966986)
chr3 (183-249)||(29541168-29541231)
[»] chr8 (2 HSPs)
chr8 (89-236)||(4780828-4780975)
chr8 (188-237)||(33468747-33468796)
[»] chr5 (2 HSPs)
chr5 (15-237)||(34152304-34152530)
chr5 (65-134)||(29023372-29023445)
[»] chr1 (2 HSPs)
chr1 (23-214)||(18285369-18285565)
chr1 (124-207)||(46481613-46481696)
[»] chr4 (1 HSPs)
chr4 (155-225)||(41972903-41972973)
[»] chr6 (1 HSPs)
chr6 (15-84)||(18506599-18506668)


Alignment Details
Target: chr2 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 14 - 253
Target Start/End: Original strand, 14128236 - 14128479
Alignment:
Q  14 ttattctggaacaaacgccaaataaaagtattgatcgtaaacggaatttgtttaagccataaaacatgattgcagc----atcaactgtcacatccaaac 109  Q
    |||||||||||||||| |||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||    ||||||| ||||||||||||    
T  14128236 ttattctggaacaaacaccaaataaaaatattgatcgtaagcggaatttgcttaagccataaaacatgattgcagcggtcatcaactatcacatccaaac 14128335  T
Q  110 taatcaaatgtttataagcacttttgacctagtacctgtgagaaaaatgaagcttccaaatccacttgtaagacacaacaacctgcaaaaccacaagtaa 209  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| |    
T  14128336 taatcaaatgtttataagcacttttgaccatgtacctgtgagaaaaatgaagcttccaaatctacttgtaagacccaacaaccttcaaaaccacaagtga 14128435  T
Q  210 aagctgctccgcacactctctcaccaacctcttctcccacacaa 253  Q
    |||||||| ||||||||| |||||||||||||||||||||||||    
T  14128436 aagctgctacgcacactccctcaccaacctcttctcccacacaa 14128479  T

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Target: chr2; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 15 - 226
Target Start/End: Original strand, 4259574 - 4259785
Alignment:
Q  15 tattctggaacaaacgccaaataaaagtattgatcgtaaacggaatttgtttaagccataaaacatgattgcagc----atcaactgtcacatccaaact 110  Q
    ||||| |||||||| ||||||||||| |||| | | || || ||||||| ||||||||||||||||||||||| |    ||||| || ||||||| | |     
T  4259574 tattcaggaacaaatgccaaataaaaatattaaccttacacagaatttgcttaagccataaaacatgattgcaacggtcatcaattgccacatccgatca 4259673  T
Q  111 aatcaaatgtttataagcacttttgacctagtacctgtgagaaa-aatgaagcttccaaatccacttgtaagacacaacaacctgcaaaaccacaagtaa 209  Q
    | |||| |    ||||||||||||||||  |||||| | ||||| |||||||||| ||||||||| ||| ||  ||| ||||||||||||| ||||||||    
T  4259674 agtcaagt----ataagcacttttgaccgtgtaccttt-agaaagaatgaagctttcaaatccacatgtcagttacaccaacctgcaaaacaacaagtaa 4259768  T
Q  210 aagctgctccgcacact 226  Q
    ||| |||||| ||||||    
T  4259769 aagttgctccacacact 4259785  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 23 - 232
Target Start/End: Complemental strand, 28728081 - 28727868
Alignment:
Q  23 aacaaacgccaaataaaagtattgatcgtaaacggaatttgtttaagccataaaacatgattgcagc----atcaactgtcacatccaaactaatcaaat 118  Q
    |||||||||||||||||| |||||| | ||| | ||||||  ||||||||||||| ||||||| |||    ||||| |  ||||||| ||||| |||| |    
T  28728081 aacaaacgccaaataaaaatattgaccttaagcagaatttacttaagccataaaatatgattgtagcggtcatcaattcccacatccgaactagtcaagt 28727982  T
Q  119 gtttataagcacttttgacctagtacctgtgagaaaaatgaagcttccaaatccacttgtaagacacaacaacctgcaaaaccacaagtaaaagctgctc 218  Q
    | ||| ||||||||||||||  |||  |||||||| ||||||||||||||||||||  || ||||||  |||||||||||||||||||| | ||||||||    
T  28727981 gattaaaagcacttttgaccgggtatatgtgagaagaatgaagcttccaaatccaccagtcagacacgccaacctgcaaaaccacaagtgagagctgctc 28727882  T
Q  219 cgcacactctctca 232  Q
     |||||||| ||||    
T  28727881 tgcacactccctca 28727868  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 35544458 - 35544221
Alignment:
Q  15 tattctggaacaaacgccaaataaaagtattgatcgtaaacggaatttgtttaagccataaaacatgattgcagc----atcaactgtcacatccaaact 110  Q
    ||||| |||||||||| |||| |||| |||| | | ||| ||||||||| ||||||||||||||||||||||| |    ||||| || ||||||| ||||    
T  35544458 tattcaggaacaaacgtcaaaaaaaaatatttaccttaagcggaatttgcttaagccataaaacatgattgcaacggtcatcaattgccacatccgaact 35544359  T
Q  111 aatcaaatgtttataagcacttttgacctagtacctgtgagaaaaatgaagcttccaaatccacttgtaagacacaacaacctgcaaaaccacaagtaaa 210  Q
      ||||  | |||||||||||||||||   ||||||||||||| |||  | ||||||||||||| ||   |||||| ||||||||||||||| |||| ||    
T  35544358 ggtcaagcgattataagcacttttgacagtgtacctgtgagaagaatacaacttccaaatccacatggccgacacaccaacctgcaaaaccagaagtgaa 35544259  T
Q  211 agctgctccgcacactctctcaccaacctcttctcccac 249  Q
    ||||||| |  |||||| ||||||||||||| |||||||    
T  35544258 agctgcttc-aacactccctcaccaacctctcctcccac 35544221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 8966939 - 8966986
Alignment:
Q  16 attctggaacaaacgccaaataaaagtattgatcgtaaacggaatttg 63  Q
    |||| |||||||||||||||||||| |||||| | |||||||||||||    
T  8966939 attcaggaacaaacgccaaataaaaatattgaccttaaacggaatttg 8966986  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 29541168 - 29541231
Alignment:
Q  183 cacaacaacctgcaaaaccacaagtaaaagctgctccgcacactctctcaccaacctcttctcccac 249  Q
    ||||||||||||||||   |||||| | ||||||||| ||||||| |||||||||| || |||||||    
T  29541168 cacaacaacctgcaaa---acaagtgatagctgctccacacactccctcaccaacccctcctcccac 29541231  T

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Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 89 - 236
Target Start/End: Original strand, 4780828 - 4780975
Alignment:
Q  89 catcaactgtcacatccaaactaatcaaatgtttataagcacttttgacctagtacctgtgagaaaaatgaagcttccaaatccacttgtaagacacaac 188  Q
    |||||| || ||||||| ||||| |||| || ||||||||||||||||||  |||| | || ||| |||||||||||||||||||| ||| ||||||| |    
T  4780828 catcaattgccacatccgaactagtcaagtgattataagcacttttgaccgtgtacttatgggaagaatgaagcttccaaatccacctgtcagacacatc 4780927  T
Q  189 aacctgcaaaaccacaagtaaaagctgctccgcacactctctcaccaa 236  Q
    ||||| ||||||||||||| |||| ||||  |||||||| ||||||||    
T  4780928 aacctacaaaaccacaagtgaaagttgctttgcacactccctcaccaa 4780975  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 33468747 - 33468796
Alignment:
Q  188 caacctgcaaaaccacaagtaaaagctgctccgcacactctctcaccaac 237  Q
    ||||||||||||| |||||| | | |||||| ||||||||||||||||||    
T  33468747 caacctgcaaaacaacaagtgacaactgctctgcacactctctcaccaac 33468796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 7e-27; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 34152304 - 34152530
Alignment:
Q  15 tattctggaacaaacgccaaataaaagtattgatcgtaaacggaatttgtttaagccataaaacatgattgcagca----tcaactgtcacatccaaact 110  Q
    ||||| ||||||||| |||||||||| |||||| | ||| ||||||||  ||||||||||||||||||||||| ||    |||| |  ||||||  | ||    
T  34152304 tattcaggaacaaacaccaaataaaaatattgaccttaagcggaattttcttaagccataaaacatgattgcaacagtcatcaatttccacatctgagct 34152403  T
Q  111 aatcaaatgtttataagcacttttgacctagtacctgtgagaaaaatgaagcttccaaatccacttgtaagacacaacaacctgcaaaaccacaagtaaa 210  Q
    | |||||   |||||||| ||||| |||  |||||| |  ||| |||||||||||||||||||| ||| |  |||| |||||||||| || |||||| ||    
T  34152404 agtcaaaatattataagcgcttttaaccgtgtacctataggaagaatgaagcttccaaatccacctgtcattcacaccaacctgcaatacaacaagtgaa 34152503  T
Q  211 agctgctccgcacactctctcaccaac 237  Q
    ||||||||||||||||| || ||||||    
T  34152504 agctgctccgcacactcgcttaccaac 34152530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 134
Target Start/End: Original strand, 29023372 - 29023445
Alignment:
Q  65 ttaagccataaaacatgattgcagc----atcaactgtcacatccaaactaatcaaatgtttataagcactttt 134  Q
    |||||||||||||||||||||||||    |||||  | ||||| ||||||| |||| || ||||||||||||||    
T  29023372 ttaagccataaaacatgattgcagcgatcatcaatcgccacattcaaactagtcaagtgattataagcactttt 29023445  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 23 - 214
Target Start/End: Complemental strand, 18285565 - 18285369
Alignment:
Q  23 aacaaacgccaaataaaagtattgatcgtaaacggaatttgtttaagccataaaacatgattgcagc-----atcaactgtcacatccaaactaatcaaa 117  Q
    |||||||| ||||||||| |||| | | ||| ||||||||| |||||||||||||||||||| || |     ||||| || ||| ||| | ||| ||||     
T  18285565 aacaaacgacaaataaaattattaaccttaagcggaatttgcttaagccataaaacatgattacaacggtatatcaattgccacgtccgatctagtcaag 18285466  T
Q  118 tgtttataagcacttttgacctagtacctgtgagaaa-aatgaagcttccaaatccacttgtaagacacaacaacctgcaaaaccacaagtaaaagct 214  Q
    || |||||||| |||||||||  |||||| | |||||  ||||||||||||||||  | ||| || |||| ||||||||||||||||| || ||||||    
T  18285465 tgattataagcgcttttgaccgtgtacctat-agaaagtatgaagcttccaaatcagcctgtcagtcacatcaacctgcaaaaccacaggtgaaagct 18285369  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 124 - 207
Target Start/End: Complemental strand, 46481696 - 46481613
Alignment:
Q  124 taagcacttttgacctagtacctgtgagaaaaatgaagcttccaaatccacttgtaagacacaacaacctgcaaaaccacaagt 207  Q
    |||||||||||||||  |||| ||||| || |||||||||||||||| ||| |||  |||||| |||| |||||||||||||||    
T  46481696 taagcacttttgaccgtgtacatgtgaaaagaatgaagcttccaaattcacatgttcgacacaccaacatgcaaaaccacaagt 46481613  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 225
Target Start/End: Complemental strand, 41972973 - 41972903
Alignment:
Q  155 aatgaagcttccaaatccacttgtaagacacaacaacctgcaaaaccacaagtaaaagctgctccgcacac 225  Q
    |||||||||||||||||||| ||| || ||||  |||||||||||| |||||| | | ||||||| |||||    
T  41972973 aatgaagcttccaaatccacatgtcagtcacacgaacctgcaaaacaacaagtgacaactgctccacacac 41972903  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 18506599 - 18506668
Alignment:
Q  15 tattctggaacaaacgccaaataaaagtattgatcgtaaacggaatttgtttaagccataaaacatgatt 84  Q
    |||| ||||||||| ||||||||||| |||| | | ||| || |||||| ||||||||||||| ||||||    
T  18506599 tattttggaacaaatgccaaataaaaatattaaccttaagcgaaatttgcttaagccataaaatatgatt 18506668  T

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