View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_76 (Length: 250)
Name: NF19913_low_76
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_76 |
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| [»] chr1 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 117 - 250
Target Start/End: Complemental strand, 46151978 - 46151844
Alignment:
| Q |
117 |
catatgttctttctccttcatcatccatt-gcttaacctgttcatcaaagcccagaagctggatccaaatcctatcttatatgtatcaattctaaaccac |
215 |
Q |
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| T |
46151978 |
catatgttctttctccttcatcatccatttgcttaacctgttcatcaaatcccagaagctggatccaaatcctatcttatatgtatcaattctaaaccac |
46151879 |
T |
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| Q |
216 |
tttacgacatccacataaaaagaaatttctcacaa |
250 |
Q |
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| T |
46151878 |
tttacgacatccacataaaaagaaatttctcacaa |
46151844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 117 - 249
Target Start/End: Complemental strand, 45992065 - 45991925
Alignment:
| Q |
117 |
catatgttctttctccttcatcatccattgcttaacctgttcatcaaagcccagaagctggatccaaatcctatctt--------atatgtatcaattct |
208 |
Q |
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| T |
45992065 |
catatgttctttctccttcatcatccattgcttaacctgttcatcaaagcccagaagctggatccaaatcctatcttatatatatatatgtatcaattct |
45991966 |
T |
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| Q |
209 |
aaaccactttacgacatccacataaaaagaaatttctcaca |
249 |
Q |
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| T |
45991965 |
aaaccattttacgacatccacataaaaagaaatttctcaca |
45991925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 250
Target Start/End: Complemental strand, 3871989 - 3871934
Alignment:
| Q |
195 |
tatgtatcaattctaaacc-actttacgacatccacataaaaagaaatttctcacaa |
250 |
Q |
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| T |
3871989 |
tatgtatcaattccaaacccattttacgacatccacat-aaaataaatttctcacaa |
3871934 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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