View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_81 (Length: 249)
Name: NF19913_low_81
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_81 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 16 - 249
Target Start/End: Original strand, 38152355 - 38152585
Alignment:
| Q |
16 |
atatcatctgatactatagtgtgccaattctaagagctgaaatttttataccaagagaatggtgcaaatcaaggttaagatgagtaccacaagtgagtgg |
115 |
Q |
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| T |
38152355 |
atatcatctgatactatagtgtgccaattctaagagctgaaatt---ataccaagagaatggtgcaaatcaaggttaagatgagtaccacaagtgagtgg |
38152451 |
T |
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| Q |
116 |
tagatttgaatgtttaaagcatctgtgccacctttgtggggagtaggctgaggagctggtgcaacatattcattaacatcaattgcaaccttcaatccac |
215 |
Q |
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| T |
38152452 |
tagatttgaatgtttaaagcatctgtgccacctttgtggggagtaggttgaggagctggtgcaacatattcattaacatcaattgcaaccttcaatccac |
38152551 |
T |
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| Q |
216 |
tccaacagccacctcctccacttatgaagtaata |
249 |
Q |
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| T |
38152552 |
tccaacagccacctcctccacttatgaagtaata |
38152585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 41 - 248
Target Start/End: Original strand, 38222049 - 38222253
Alignment:
| Q |
41 |
aattctaagagctgaaatttttataccaagagaatggtgcaaatcaaggttaagatgagtaccacaagtgagtggtagatttgaatgtttaaagcatctg |
140 |
Q |
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| T |
38222049 |
aattctaatagctgaaattattataccaagaagttggtgcacatgaagattaagatgagcacaacaagtgagtggtagatttgaatgtttgaagtcgctg |
38222148 |
T |
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| Q |
141 |
tgccacctttgtggggagtaggctgaggagctggtgcaacatattcattaacatcaattgcaaccttcaatccactccaacagccacctcctccacttat |
240 |
Q |
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| T |
38222149 |
a---acttttgtggggagtaggctgaggagctggtgcaacatgttcattaacatcgattgcgaccttcactccgcgctgacagaaacctcctccgcttat |
38222245 |
T |
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| Q |
241 |
gaagtaat |
248 |
Q |
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| T |
38222246 |
gaagtaat |
38222253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 61 - 248
Target Start/End: Original strand, 38228434 - 38228618
Alignment:
| Q |
61 |
ttataccaagagaatggtgcaaatcaaggttaagatgagtaccacaagtgagtggtagatttgaatgtttaaagcatctgtgccacctttgtggggagta |
160 |
Q |
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| T |
38228434 |
ttataccaagaagttggtgcacatgaagattaagatgagcacagcaagtgagtggtagatttgaatgtttgaagtcgctga---acttttgtggggagta |
38228530 |
T |
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| Q |
161 |
ggctgaggagctggtgcaacatattcattaacatcaattgcaaccttcaatccactccaacagccacctcctccacttatgaagtaat |
248 |
Q |
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| T |
38228531 |
ggctgaggagctggtgcaacatgttcattaacatcgattgcgaccttcactccgcgctgacagaaacctcctccgcttatgaagtaat |
38228618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 61 - 249
Target Start/End: Original strand, 38158731 - 38158913
Alignment:
| Q |
61 |
ttataccaagagaatggtgcaaatcaaggttaagatgagtaccacaagtgagtggtagatttgaatgtttaaagcatctgtgccacctttgtggggagta |
160 |
Q |
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| T |
38158731 |
ttataccaagaggttggtgcacatcaagattaagatgag---cacagatgaatggtaaatttaaatgtttgaagcatttga---acctttgtggggagta |
38158824 |
T |
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| Q |
161 |
ggctgaggagctggtgcaacatattcattaacatcaattgcaaccttcaatccactccaacagccacctcctccacttatgaagtaata |
249 |
Q |
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| T |
38158825 |
ggctgaggagctggtgcaacatgttcattaacatcgattgcgaccttcactccgcgctgacagaaacctcctccgcttatgaagtaata |
38158913 |
T |
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