View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_82 (Length: 248)
Name: NF19913_low_82
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_82 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 236
Target Start/End: Original strand, 44824091 - 44824309
Alignment:
| Q |
18 |
gctttcttactttactttctttattttttaagcacaaaacatgacattactaaaactaaatcgaannnnnnncgattttctctgatacgctgttgttgtc |
117 |
Q |
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| T |
44824091 |
gctttcttactttactttctttattttttaagcacaaaacaggacattactaaaactaaatcgaatttttttcgattttctctgatacgctgttgttgtc |
44824190 |
T |
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| Q |
118 |
tcccttctacttcacactctagtcaagtcaaaactctctctttcaacccaacaatattttctcctcaagttagcatcttttttcaactagcactttgaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44824191 |
tcccttctacttcacactctagtcaagtcaaaactctctctttcaacccaacaatattttctcctcaagttagcatcttttttcaactagcactttgaaa |
44824290 |
T |
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| Q |
218 |
agaagcttcaatggagaat |
236 |
Q |
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||||||||||||||||||| |
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| T |
44824291 |
agaagcttcaatggagaat |
44824309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 48571288 - 48571386
Alignment:
| Q |
138 |
agtcaagtcaaaactctctctttcaacccaacaatattttctcctcaagttagcatcttttttcaactagcactttgaaaagaagcttcaatggagaat |
236 |
Q |
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||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||||||| ||||| | ||||| |||||||||| |
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| T |
48571288 |
agtcaggtcaaaactctctctttcaatccaacaaaattttctcctcaagttagcattttttttcaactagcacgttgaaggggagctttaatggagaat |
48571386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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