View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_84 (Length: 245)
Name: NF19913_low_84
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_84 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 23830242 - 23830016
Alignment:
| Q |
1 |
aatagagttgtctcttttaagtgggttcattttactagtactagtatatttttctcagacacttcgccactctgttgtgctcgtcagcttagtcgtgttt |
100 |
Q |
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| T |
23830242 |
aatagagttgtctcttttaagtgggttcattttactagtactagtatatttttctcagacacttcaccactctgttgtgctcgtcagcttagtcgtgttt |
23830143 |
T |
|
| Q |
101 |
tgactgttgatgctataggcgttgctcatccgcaaatgcagtttgcttttctttgttgtccttgtttattttgttttcattctcatgnnnnnnngttagc |
200 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
23830142 |
tgactgttgatgctataggcgttgctcatccgcgaatgcagtttgcttttctttgttgttcttgtttattttgttttcattctcatgaaaaaaagttagc |
23830043 |
T |
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| Q |
201 |
aactaaaagataaagcttgacagttat |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
23830042 |
aactaaaagataaagcttgacagttat |
23830016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 23821062 - 23820974
Alignment:
| Q |
15 |
ttttaagtgggttcattttactagtactagtatatttttctcagacacttcgccactctgttgtgctcgtcagcttagtcgtgttttga |
103 |
Q |
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||||||||||||| |||||||| ||||||||||| |||||||| || ||||||||||| |||||||| ||||||||||| |||||||| |
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| T |
23821062 |
ttttaagtgggtttattttactggtactagtatacttttctcacactcttcgccactccattgtgctcctcagcttagtcatgttttga |
23820974 |
T |
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