View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_85 (Length: 245)
Name: NF19913_low_85
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_85 |
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Alignment Details
Target: chr4 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 47010797 - 47011011
Alignment:
| Q |
12 |
agcagagaacaaatgcagcaatgaaaagaagtatgaacacaaatttagcatgtttaataacaaagaaaaaatgtagttgtttagtttttcaaagttaaac |
111 |
Q |
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| T |
47010797 |
agcagaaaacaaatgcagcaatgaaaagaagtatgaacacaaatttagcatgtttaataacaaagaaaaaatgtagttgtttagtttttcaaagttaaac |
47010896 |
T |
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| Q |
112 |
cagtaaagccatcagctttgatagcatcaaggaagctaaattcattgtctaatcataaaatacgagacactaaatcagcatacatgagacaaacgtcaat |
211 |
Q |
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| T |
47010897 |
cagtaaagccatcagctttgatagcatcaaggaagctaaattcattgtctaatcataaaatacgagacactgaatcagcatacatgagacaaacgtcaat |
47010996 |
T |
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| Q |
212 |
ctcagaccaatagac |
226 |
Q |
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| T |
47010997 |
ctcagaccaatagac |
47011011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 132 - 218
Target Start/End: Original strand, 47013392 - 47013477
Alignment:
| Q |
132 |
atagcatcaaggaagctaaattcattgtctaatcataaaatacgagacactaaatcagcatacatgagacaaacgtcaatctcagac |
218 |
Q |
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|||||||||||||||||||||||||| ||||||||| |||||||| ||||| |||||||||| | |||||||| ||||||||||||| |
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| T |
47013392 |
atagcatcaaggaagctaaattcattatctaatcat-aaatacgatacactgaatcagcatatacgagacaaaagtcaatctcagac |
47013477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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