View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_87 (Length: 242)
Name: NF19913_low_87
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_87 |
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Alignment Details
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 52672299 - 52672526
Alignment:
| Q |
1 |
tgaaaccctatttcgaggaggggaacaataagaagtgtttgttttttccaagataaagccttgcatcaattaaatnnnnnnnnnnnnnnnta--gagatt |
98 |
Q |
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| T |
52672299 |
tgaaaccctatttcgaggaggggaacaataagaagtgtttgttttttccaagataaagacttgcatcaattaaataaataataaaaaaaaaacagagatt |
52672398 |
T |
|
| Q |
99 |
aagaatcaatgaacctggatacataatatatac-aaacggtggattgaatcggcaatgaaactgaataagtgagtttgaatttggcacggagaagtctca |
197 |
Q |
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||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
52672399 |
aagaatcaatgaacctggatacacaatatataccaaacggtggattgaatcggcaatgaaactgaataagtgagtttgaatttggcacggataagtctca |
52672498 |
T |
|
| Q |
198 |
aagctgtggcagcagattataacatcag |
225 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
52672499 |
aagctgtggcagcagattataacatcag |
52672526 |
T |
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