View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_89 (Length: 240)
Name: NF19913_low_89
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_89 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38152668 - 38152888
Alignment:
| Q |
1 |
tcatagcttgtcttgttcacctccagcacatggtaaaggtacttttgatattcttctccatatccaaagacttgcaaagcaaaacatgaaaaaataagtc |
100 |
Q |
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| T |
38152668 |
tcatagcttgtcttgttcacctccagcacatggtaaaggtacttttgatattcttctccatatccaaagacttgcaaagcaaaacatgaaaaaataagtc |
38152767 |
T |
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| Q |
101 |
taccattgatgaaaataaaagaaattaaatcgattacaataatgtaagtatagagtgaaacaaaatataaattgactttcaaatcatagccttataagtg |
200 |
Q |
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| T |
38152768 |
taccattgatgaaaataaaagaaagtaaatcgattacaataatgtaagtatagagtgaaacaaaatataaattgactttcaaatcatagccttataagtg |
38152867 |
T |
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| Q |
201 |
agcaaactattatatgaggac |
221 |
Q |
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||||||||||||||||||||| |
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| T |
38152868 |
agcaaactattatatgaggac |
38152888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 59 - 221
Target Start/End: Original strand, 38159042 - 38159216
Alignment:
| Q |
59 |
catatccaaagacttgcaaagcaaaacatgaaaaaataagtctaccattgatgaaaataaaagaaattaaatcgattacaataatgtaagt--------- |
149 |
Q |
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| T |
38159042 |
catatccaaaaacttccaaaccaaagcataagaaaataattcaaccattggtgaaaataaaagaaagtaaattgattacaataatgtaagtcttgcaatc |
38159141 |
T |
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| Q |
150 |
---atagagtgaaacaaaatataaattgactttcaaatcatagccttataagtgagcaaactattatatgaggac |
221 |
Q |
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| T |
38159142 |
ataatagagtgaaacaaattataaattgactttcaaatcatacccttgtaagtgaacaaggaattatatgaggac |
38159216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 38222383 - 38222423
Alignment:
| Q |
59 |
catatccaaagacttgcaaagcaaaacatgaaaaaataagt |
99 |
Q |
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||||||||||||||||||||||||| ||| | ||||||||| |
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| T |
38222383 |
catatccaaagacttgcaaagcaaagcataagaaaataagt |
38222423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 99
Target Start/End: Original strand, 38228748 - 38228788
Alignment:
| Q |
59 |
catatccaaagacttgcaaagcaaaacatgaaaaaataagt |
99 |
Q |
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||||||||||||||||||||||||| ||| | ||||||||| |
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| T |
38228748 |
catatccaaagacttgcaaagcaaagcataagaaaataagt |
38228788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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