View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19913_low_94 (Length: 238)
Name: NF19913_low_94
Description: NF19913
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19913_low_94 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 33991528 - 33991745
Alignment:
| Q |
4 |
aacgtttttccatcactatgctcagatggnnnnnnntagttcagatattatcgacaaaaatcttgtcgaaaaggtacttgttcttactttcttacatatg |
103 |
Q |
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|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
33991528 |
aacgcttttccatcactatgctcagatggaaaaaaatagttcagatattatcgacaaaaatcttgtcgaaaaggtacttgttcttactttcttgcatatg |
33991627 |
T |
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| Q |
104 |
agcgttatctattatgtagcatcgacacactttagattgaagtcacatagaaagatgcctatgttaaaatcatttgattattgaccatatttacttgcaa |
203 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33991628 |
agcgttatctattatgtagcatcgacacacttcagattgaagtcacatagaaagatgcctatgttaaaatcatttgattattgaccatatttacttgcaa |
33991727 |
T |
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| Q |
204 |
tgaattgcaggtcgttag |
221 |
Q |
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|||||||||||||||||| |
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| T |
33991728 |
tgaattgcaggtcgttag |
33991745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 33974609 - 33974825
Alignment:
| Q |
4 |
aacgtttttccatcactatgctcagatggnnnnnnntagttcagatattatcgacaaaaatcttgtcgaaaaggtacttgttcttactttcttacatatg |
103 |
Q |
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|||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
33974609 |
aacgcttttccatcactatgctcaaatggaaaaaaacagttcagatattatcgacaaaaatcttgtagaaaaggtacttgttcttactttcttacatatg |
33974708 |
T |
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| Q |
104 |
agcgttatctattatgtagcatcgacacactttagattgaagtcacatagaaagatgcctatgttaaaatcatttgattattgaccatatttacttgcaa |
203 |
Q |
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| T |
33974709 |
agcgttatctattatgtagcatcgacacacttcagattgaagtcacatagaaagacgccta-gttataatcatttgattactgaccatactcgcttgcaa |
33974807 |
T |
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| Q |
204 |
tgaattgcaggtcgttag |
221 |
Q |
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| T |
33974808 |
tgaattgcaggtcgttag |
33974825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 9 - 221
Target Start/End: Original strand, 33952013 - 33952225
Alignment:
| Q |
9 |
ttttccatcactatgctcagatggnnnnnnntagttcagatattatcgacaaaaatcttgtcgaaaaggtacttgttcttactttcttacatatgagcgt |
108 |
Q |
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|||||||||| ||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
33952013 |
ttttccatcattatgctcagatggaaaaaaatagttcagatatcatcaacaaaaatcttgtcgaaaaggtacttgttcttactttctaacatatgagcgt |
33952112 |
T |
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| Q |
109 |
tatctattatgtagcatcgacacactttagattgaagtcacatagaaagatgcctatgttaaaatcatttgattattgaccatatttacttgcaatgaat |
208 |
Q |
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| T |
33952113 |
tatctattatgtagcattgacacgcttcagattgatgtcaaatagaaagaagcctaagttataatcatttgattactgaccaaatttgcttgcaatgaat |
33952212 |
T |
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| Q |
209 |
tgcaggtcgttag |
221 |
Q |
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||||||| ||||| |
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| T |
33952213 |
tgcaggttgttag |
33952225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 11704 - 11752
Alignment:
| Q |
42 |
gttcagatattatcgacaaaaatcttgtcgaaaaggtacttgttcttac |
90 |
Q |
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| T |
11704 |
gttcagatactatcaacaaagatcttgtggaaaaggtacttgttcttac |
11752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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