View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19914_high_12 (Length: 258)
Name: NF19914_high_12
Description: NF19914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19914_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 19 - 248
Target Start/End: Original strand, 5154311 - 5154539
Alignment:
| Q |
19 |
cttctatgctgctagggttttgttcttagggtttttcttctatgttgttaaatattgttctctttttaggggtttgttctctttttacataagtaactat |
118 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
5154311 |
cttctatgctgctagggttttgttctaagggtttttcttctatgttgttaaatattgttctctttttagggttttgttctctttttacataactaactat |
5154410 |
T |
|
| Q |
119 |
cgtttctatgattccacctcaaatctcctacttgtattaaagctttgtttgccatgtttataatcccgtttcattcatataagggaagttgctaagttaa |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
5154411 |
cgtttctatgattccacctcaaatctcctacttatatgaaagctttgtttgccatgtttataaacccgtttcattcatataagggaagttgctaa-ttaa |
5154509 |
T |
|
| Q |
219 |
ctaatttgtatataacaaaattagcctatg |
248 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
5154510 |
ctaatttgtatataacaaaattagcctatg |
5154539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University