View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19914_high_13 (Length: 250)

Name: NF19914_high_13
Description: NF19914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19914_high_13
NF19914_high_13
[»] chr1 (8 HSPs)
chr1 (16-250)||(35159607-35159842)
chr1 (46-149)||(52435382-52435485)
chr1 (49-141)||(34502852-34502944)
chr1 (46-149)||(46593776-46593880)
chr1 (46-143)||(47720134-47720231)
chr1 (46-143)||(47727126-47727223)
chr1 (83-159)||(34599048-34599124)
chr1 (53-109)||(40723986-40724042)
[»] chr2 (7 HSPs)
chr2 (46-152)||(42435473-42435579)
chr2 (46-149)||(33078091-33078194)
chr2 (46-149)||(31807773-31807876)
chr2 (46-149)||(36613308-36613411)
chr2 (46-149)||(36621159-36621262)
chr2 (82-137)||(1926221-1926276)
chr2 (103-143)||(18318351-18318391)
[»] chr3 (9 HSPs)
chr3 (46-149)||(46798997-46799100)
chr3 (50-149)||(22926375-22926473)
chr3 (50-146)||(7754874-7754971)
chr3 (46-122)||(52796235-52796311)
chr3 (49-127)||(49033643-49033720)
chr3 (50-144)||(50121080-50121173)
chr3 (48-143)||(42791534-42791629)
chr3 (59-149)||(26843062-26843151)
chr3 (91-160)||(1411848-1411916)
[»] chr7 (11 HSPs)
chr7 (46-150)||(22200132-22200236)
chr7 (46-150)||(22237585-22237689)
chr7 (46-149)||(30703717-30703820)
chr7 (46-149)||(35035615-35035718)
chr7 (46-149)||(41616186-41616289)
chr7 (50-149)||(30413642-30413741)
chr7 (41-149)||(5546877-5546986)
chr7 (45-149)||(23701821-23701926)
chr7 (48-192)||(21439692-21439836)
chr7 (46-136)||(27996679-27996770)
chr7 (91-136)||(21361042-21361087)
[»] chr8 (9 HSPs)
chr8 (46-149)||(13068226-13068329)
chr8 (48-189)||(45394055-45394198)
chr8 (54-158)||(38939309-38939415)
chr8 (50-191)||(12506776-12506917)
chr8 (46-142)||(42027508-42027604)
chr8 (49-150)||(31969561-31969661)
chr8 (45-150)||(42939278-42939383)
chr8 (46-149)||(31452223-31452326)
chr8 (49-141)||(31974208-31974299)
[»] chr6 (7 HSPs)
chr6 (53-149)||(4601368-4601465)
chr6 (49-159)||(3435733-3435843)
chr6 (46-115)||(33755635-33755704)
chr6 (50-149)||(7246539-7246637)
chr6 (48-127)||(20621746-20621824)
chr6 (88-149)||(12057460-12057522)
chr6 (49-142)||(5583605-5583698)
[»] chr4 (8 HSPs)
chr4 (46-149)||(21622646-21622749)
chr4 (46-149)||(44655049-44655150)
chr4 (50-132)||(45096811-45096893)
chr4 (49-149)||(28115646-28115748)
chr4 (51-149)||(38616895-38616993)
chr4 (106-149)||(3525339-3525382)
chr4 (94-137)||(31938963-31939006)
chr4 (82-149)||(40319988-40320055)
[»] chr5 (5 HSPs)
chr5 (46-149)||(20869349-20869452)
chr5 (44-141)||(36784224-36784321)
chr5 (82-134)||(3426190-3426242)
chr5 (62-160)||(6204276-6204377)
chr5 (93-136)||(19253933-19253976)
[»] scaffold0040 (1 HSPs)
scaffold0040 (46-120)||(57589-57664)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 35159842 - 35159607
Alignment:
Q  16 atgggtcatattagctagtgttacagggatactggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattga 115  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35159842 atgggtcatattagctagtgttacagagatactagttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattga 35159743  T
Q  116 ttacacatctttcaatgcaaaaattactatatttattctcttaatcagcgcctccgagacatttgttaacattttccata-nnnnnnnagtacaatcttg 214  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||        ||||||||||||    
T  35159742 ttacacatctttcaatgcaaaaattactatatttattctcttaaccagcgcctccgagacacttgttaacattttccatattttttttagtacaatcttg 35159643  T
Q  215 ttaaagcatgtaaatataattagtttgtaaagtata 250  Q
    ||||||||||||||||||||||||||||||||||||    
T  35159642 ttaaagcatgtaaatataattagtttgtaaagtata 35159607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 52435382 - 52435485
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactat 145  Q
    ||||||||||||||||||||||||||| || || | |||||| | ||||||||| |||||||||||||||||| |||  |||||||||||| |||| |||    
T  52435382 actggttaaggaagccaaaagaagaaagtgaaaataaaaaaaaatactttttaatcttttaatgcattgattatacagttttcaatgcaaatattattat 52435481  T
Q  146 attt 149  Q
    ||||    
T  52435482 attt 52435485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 49 - 141
Target Start/End: Original strand, 34502852 - 34502944
Alignment:
Q  49 ggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaatta 141  Q
    |||||||||||  ||||||  |||||  |||| |||||||| | ||||||| |||||||||||||||||||||| ||||||||||||| ||||    
T  34502852 ggttaaggaagggaaaagagaaaattttaacttaaaaaagatattttttaagcttttaatgcattgattacacaactttcaatgcaaatatta 34502944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 46593776 - 46593880
Alignment:
Q  46 actggttaaggaagccaaaagaagaaatt-gcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattacta 144  Q
    |||||||||||||||||||||||||| || | || |||||||| | |||||||||  |||| || |||||||||||||  ||||||||| || |||||||    
T  46593776 actggttaaggaagccaaaagaagaattttgtaagtcaaaaaatatactttttaagttttttatacattgattacacaaatttcaatgctaatattacta 46593875  T
Q  145 tattt 149  Q
    |||||    
T  46593876 tattt 46593880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 47720134 - 47720231
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattact 143  Q
    |||||||||| ||| || || ||||||||  || | |||||||| | |||||||||||||||||||||||||| ||| |||| |||| ||| ||||||    
T  47720134 actggttaagaaagtcagaaaaagaaattataaattaaaaaagatattttttaaacttttaatgcattgattatacaacttttaatgtaaatattact 47720231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 46 - 143
Target Start/End: Original strand, 47727126 - 47727223
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattact 143  Q
    |||||||||| ||| || || ||||||||  || | |||||||| | |||||||||||||||||||||||||| ||| |||| |||| ||| ||||||    
T  47727126 actggttaagaaagtcagaaaaagaaattataaattaaaaaagatattttttaaacttttaatgcattgattatacaacttttaatgtaaatattact 47727223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 34599124 - 34599048
Alignment:
Q  83 aaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactatatttattctcttaa 159  Q
    ||||||| ||||||| ||||||| ||  ||||||||||||  ||||||||||| ||||| |||||||| | ||||||    
T  34599124 aaaaagacacttttttaactttttatctattgattacacaattttcaatgcaataattaatatatttactttcttaa 34599048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 109
Target Start/End: Original strand, 40723986 - 40724042
Alignment:
Q  53 aaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatg 109  Q
    |||||| ||||||||| |||||| || | |||||||| || ||||||||||||||||    
T  40723986 aaggaaaccaaaagaaaaaattgtaagttaaaaaagataccttttaaacttttaatg 40724042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 46 - 152
Target Start/End: Original strand, 42435473 - 42435579
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactat 145  Q
    ||||||||||||||||||||||||||||||||| |||||||||| | |||||| | |||||||||||||||||||||||||||| | |||||||||||||    
T  42435473 actggttaaggaagccaaaagaagaaattgcaaatcaaaaaagacaatttttagatttttaatgcattgattacacatctttcagtacaaaaattactat 42435572  T
Q  146 atttatt 152  Q
    |||||||    
T  42435573 atttatt 42435579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 33078194 - 33078091
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactat 145  Q
    ||||||||||||||||||||||||||| || || |||||||||| ||||||||| ||||||||||||||||||| || ||||||||||||| ||||||||    
T  33078194 actggttaaggaagccaaaagaagaaagtgaaagtcaaaaaagatactttttaatcttttaatgcattgattactcagctttcaatgcaaatattactat 33078095  T
Q  146 attt 149  Q
    ||||    
T  33078094 attt 33078091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 31807773 - 31807876
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactat 145  Q
    |||||||||||||||||||||||||||||| || |||||||||| ||||||||| |||||||||||||||||||||| |||||||   ||| ||||||||    
T  31807773 actggttaaggaagccaaaagaagaaattgtaagtcaaaaaagacactttttaagcttttaatgcattgattacacaactttcaacataaatattactat 31807872  T
Q  146 attt 149  Q
    ||||    
T  31807873 attt 31807876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 36613411 - 36613308
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactat 145  Q
    |||||||||||||||||||||| ||||||| || | |||||||| |||||||||  ||| ||||||||||||||||| ||||| ||||||| ||||||||    
T  36613411 actggttaaggaagccaaaagaggaaattgtaaattaaaaaagacactttttaagttttgaatgcattgattacacaactttccatgcaaatattactat 36613312  T
Q  146 attt 149  Q
    ||||    
T  36613311 attt 36613308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 36621262 - 36621159
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactat 145  Q
    |||||||||||||||||||||| ||||||| || | |||||||| |||||||||  ||| ||||||||||||||||| ||||| ||||||| ||||||||    
T  36621262 actggttaaggaagccaaaagaggaaattgtaaattaaaaaagacactttttaagttttgaatgcattgattacacaactttccatgcaaatattactat 36621163  T
Q  146 attt 149  Q
    ||||    
T  36621162 attt 36621159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 1926221 - 1926276
Alignment:
Q  82 aaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaa 137  Q
    ||||| ||||||||||||| |||||||||||||||||| ||  ||| |||||||||    
T  1926221 aaaaatgaaactttttaaatttttaatgcattgattacgcagtttttaatgcaaaa 1926276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 18318351 - 18318391
Alignment:
Q  103 tttaatgcattgattacacatctttcaatgcaaaaattact 143  Q
    |||||||||||||||||||| |||| |||||||| ||||||    
T  18318351 tttaatgcattgattacacaactttgaatgcaaatattact 18318391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 46798997 - 46799100
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactat 145  Q
    ||||||||||||||||||||||||||||||  | | |||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  46798997 actggttaaggaagccaaaagaagaaattgttaataaaaaaagacactttttaagcttttaatgcattgattacacatcttttaatgcaaaaattactat 46799096  T
Q  146 attt 149  Q
    ||||    
T  46799097 attt 46799100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 22926375 - 22926473
Alignment:
Q  50 gttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactatattt 149  Q
    ||||||||||||||| |||||||| | || ||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||    
T  22926375 gttaaggaagccaaatgaagaaat-gtaagtcagaaaagacactttttaaacttttaatgcattgattacacaactttcaatgcaaatattactatattt 22926473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 146
Target Start/End: Complemental strand, 7754971 - 7754874
Alignment:
Q  50 gttaaggaagccaaaagaagaaattgcaactcaaaaaagaaac-tttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactata 146  Q
    |||||||||||||||| |||||||| ||| |||||||||| || |||||||||||||||| ||||||||||||  ||||||||| |||| ||||||||    
T  7754971 gttaaggaagccaaaacaagaaattacaaatcaaaaaagatacatttttaaacttttaattcattgattacactgctttcaatgtaaaacttactata 7754874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 52796235 - 52796311
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacaca 122  Q
    ||||||||||||| |||||||||||||||  || |||||| ||| ||||||||| ||||||||||||||||||||||    
T  52796235 actggttaaggaatccaaaagaagaaattaaaaatcaaaagagacactttttaatcttttaatgcattgattacaca 52796311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 127
Target Start/End: Original strand, 49033643 - 49033720
Alignment:
Q  49 ggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatcttt 127  Q
    ||||||||||||||||  ||||||||| || |||||||| | |||||||||| |||||||||||| |||||||| ||||    
T  49033643 ggttaaggaagccaaataaagaaattgtaagtcaaaaaa-acactttttaaatttttaatgcatttattacacaacttt 49033720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 50121173 - 50121080
Alignment:
Q  50 gttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattacta 144  Q
    ||||||||||| |||||||||||||| || |||||| ||| | ||||||| ||| |||| |||| |||||||| |||| |||||||| |||||||    
T  50121173 gttaaggaagc-aaaagaagaaattgtaaatcaaaagagacattttttaagcttgtaattcattaattacacaacttttaatgcaaatattacta 50121080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 143
Target Start/End: Complemental strand, 42791629 - 42791534
Alignment:
Q  48 tggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattact 143  Q
    ||||||||||||| ||||||| |||||| || | |||||||| ||||||| |  |||||||| |||||||| ||| || |||||| ||| ||||||    
T  42791629 tggttaaggaagctaaaagaaaaaattgtaagttaaaaaagacactttttgagtttttaatgtattgattatacaactatcaatgaaaatattact 42791534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 26843151 - 26843062
Alignment:
Q  59 gccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactatattt 149  Q
    ||||||||||||||||| || | |||||| | || ||||||  |||||||||||||||| ||||  |||||| ||||| ||||||||||||    
T  26843151 gccaaaagaagaaattgtaaattaaaaaa-ataccttttaagtttttaatgcattgatttcacagttttcaaagcaaatattactatattt 26843062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 160
Target Start/End: Complemental strand, 1411916 - 1411848
Alignment:
Q  91 actttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactatatttattctcttaat 160  Q
    |||||||||| ||||||| ||||||||||||| |||||||| |||| |||| |||||||  |||||||||    
T  1411916 actttttaaa-ttttaatacattgattacacaactttcaattcaaatattattatatttgctctcttaat 1411848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 69; Significance: 5e-31; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 46 - 150
Target Start/End: Original strand, 22200132 - 22200236
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactat 145  Q
    |||||||||||||||||||||||||||||| || | |||| ||| |||||||| | |||||||| ||||||||||||||||||||| |||||||||||||    
T  22200132 actggttaaggaagccaaaagaagaaattgtaagttaaaatagacactttttagatttttaatgtattgattacacatctttcaatacaaaaattactat 22200231  T
Q  146 attta 150  Q
    |||||    
T  22200232 attta 22200236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 22237689 - 22237585
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactat 145  Q
    |||||||||||||||||||||||||||||| || | |||| ||| |||||||| | |||||||| ||||||||||||||||||||| |||||||||||||    
T  22237689 actggttaaggaagccaaaagaagaaattgtaagttaaaatagacactttttagatttttaatgtattgattacacatctttcaatacaaaaattactat 22237590  T
Q  146 attta 150  Q
    |||||    
T  22237589 attta 22237585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 30703717 - 30703820
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactat 145  Q
    ||||||||||||||||||||||||||| || || | |||||||| |||| |||| |||||||||||||||||||||| ||||||||  ||| ||||||||    
T  30703717 actggttaaggaagccaaaagaagaaagtgaaagtaaaaaaagacacttgttaatcttttaatgcattgattacacaactttcaatttaaatattactat 30703816  T
Q  146 attt 149  Q
    ||||    
T  30703817 attt 30703820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 35035615 - 35035718
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactat 145  Q
    ||||||||| ||||||||| | |||||||| || | |||||| | ||||||||| ||||||||||||||| |||||| |||||||| |||||||||||||    
T  35035615 actggttaaagaagccaaagggagaaattgtaagtaaaaaaatatactttttaagcttttaatgcattgaatacacaactttcaatacaaaaattactat 35035714  T
Q  146 attt 149  Q
    ||||    
T  35035715 attt 35035718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 41616289 - 41616186
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactat 145  Q
    |||||||||||| | |||||||||||| || || |||||||||| |||| ||||  |||||||||||| |||||||||||||||||| ||| ||||||||    
T  41616289 actggttaaggagggcaaaagaagaaagtgaaagtcaaaaaagacacttattaattttttaatgcattaattacacatctttcaatgtaaatattactat 41616190  T
Q  146 attt 149  Q
    ||||    
T  41616189 attt 41616186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 50 - 149
Target Start/End: Complemental strand, 30413741 - 30413642
Alignment:
Q  50 gttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactatattt 149  Q
    |||||||||| |||||||| |||||| || |||||||||| |||||||||| |||||||| |||||||| | | |||| |||| ||||||||||||||||    
T  30413741 gttaaggaagtcaaaagaaaaaattgtaagtcaaaaaagacactttttaaatttttaatgaattgattaaataacttttaatgaaaaaattactatattt 30413642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 5546877 - 5546986
Alignment:
Q  41 gggatactggttaaggaagccaaaagaagaaatt-gcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaat 139  Q
    |||| ||||||||||||| |||||| || ||||| || | | |||||| | | ||||||| |||||||||||||||||| |||  |||||||||||||||    
T  5546877 gggacactggttaaggaatccaaaaaaaaaaatttgctagttaaaaaatacagtttttaagcttttaatgcattgattatacaattttcaatgcaaaaat 5546976  T
Q  140 tactatattt 149  Q
    ||||||||||    
T  5546977 tactatattt 5546986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 23701926 - 23701821
Alignment:
Q  45 tactggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaa-attact 143  Q
    |||| ||||||||||| |||||| ||||||  || | ||||| || |||||||||  |||||||||||||| |||| | ||||||||| |||| ||||||    
T  23701926 tacttgttaaggaagctaaaagaggaaatttgaagtaaaaaatgacactttttaagtttttaatgcattgactacatagctttcaatgtaaaatattact 23701827  T
Q  144 atattt 149  Q
    ||||||    
T  23701826 atattt 23701821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 192
Target Start/End: Original strand, 21439692 - 21439836
Alignment:
Q  48 tggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaa-attactata 146  Q
    ||||||||||||| |||||  ||||||  || |||||||  | ||||||||||||||||||||| |||   |||| |||||||| ||||| | |||||||    
T  21439692 tggttaaggaagctaaaagtggaaattttaagtcaaaaagaacactttttaaacttttaatgcaatgacagcacaactttcaatacaaaatactactata 21439791  T
Q  147 tttattctcttaatcagcgcctccgagacatttgttaacattttcc 192  Q
    |||   ||||||| ||| |||   |||||||| |||||||||||||    
T  21439792 ttt-gactcttaaccagtgccctagagacattggttaacattttcc 21439836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 46 - 136
Target Start/End: Complemental strand, 27996770 - 27996679
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaa-gaaactttttaaacttttaatgcattgattacacatctttcaatgcaaa 136  Q
    ||||||||||||||||||||||  |||||  |||| |||||| |  | ||||||| ||||||||||||| | || ||| |||||||||||||    
T  27996770 actggttaaggaagccaaaagagaaaattttaactaaaaaaatgttattttttaagcttttaatgcattaactatacaactttcaatgcaaa 27996679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 136
Target Start/End: Complemental strand, 21361087 - 21361042
Alignment:
Q  91 actttttaaacttttaatgcattgattacacatctttcaatgcaaa 136  Q
    ||||||| | |||||||||||||||||||||| || ||||||||||    
T  21361087 actttttcagcttttaatgcattgattacacacctctcaatgcaaa 21361042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 13068226 - 13068329
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactat 145  Q
    ||||||||||||||| ||||||| ||||||  | |||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||| |||| |||    
T  13068226 actggttaaggaagctaaaagaataaattgtgagtcaaaaaagacactttttaaacttttaatacattgattacacaactttcaatgcaaatattattat 13068325  T
Q  146 attt 149  Q
    ||||    
T  13068326 attt 13068329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 48 - 189
Target Start/End: Complemental strand, 45394198 - 45394055
Alignment:
Q  48 tggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaacttttt--aaacttttaatgcattgattacacatctttcaatgcaaaaattactat 145  Q
    |||||||||||| ||||||||||||||  || | |||||||| |||||||  ||||||||||| ||||||||||||| ||||||||| |||| |||||||    
T  45394198 tggttaaggaagtcaaaagaagaaattataagtaaaaaaagatactttttttaaacttttaatacattgattacacaactttcaatgtaaaacttactat 45394099  T
Q  146 atttattctcttaatcagcgcctccgagacatttgttaacattt 189  Q
    |||   |||||||| ||| ||||||| |||| | ||||||||||    
T  45394098 attcgctctcttaaccagtgcctccgggacactggttaacattt 45394055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 158
Target Start/End: Complemental strand, 38939415 - 38939309
Alignment:
Q  54 aggaagccaaaagaagaaattgcaac-tcaaaaaagaaactttttaa-acttttaatgcattgattacacatctttcaatgcaaaaattactatatttat 151  Q
    |||||||||||||||||| ||||||  |||||||||| |||||| |  | ||||||||||||||||||||||||||||||| |||||||||||||||||     
T  38939415 aggaagccaaaagaagaatttgcaaagtcaaaaaagacacttttgaggaattttaatgcattgattacacatctttcaatgaaaaaattactatatttac 38939316  T
Q  152 tctctta 158  Q
    |||||||    
T  38939315 tctctta 38939309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 50 - 191
Target Start/End: Original strand, 12506776 - 12506917
Alignment:
Q  50 gttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactatattt 149  Q
    ||||||||| | |||||||||||||| || |||||||||| |||||||||| |||||||| |||||||| ||| ||||||||  ||| ||||||||||||    
T  12506776 gttaaggaaactaaaagaagaaattgtaagtcaaaaaagacactttttaaatttttaatgtattgattatacaactttcaataaaaatattactatattt 12506875  T
Q  150 attctcttaatcagcgcctccgagacatttgttaacattttc 191  Q
    | |  ||||| ||| ||| | ||| |||  ||||||||||||    
T  12506876 acttccttaaccagtgccccggaggcatcggttaacattttc 12506917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 142
Target Start/End: Complemental strand, 42027604 - 42027508
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattac 142  Q
    |||||||||||||| |||||||||||||||||| | |||||||| |  |||||||||||||||| |||||||||||   ||| ||||||||||||||    
T  42027604 actggttaaggaagtcaaaagaagaaattgcaagtaaaaaaagatatattttaaacttttaatgtattgattacacggtttttaatgcaaaaattac 42027508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 49 - 150
Target Start/End: Complemental strand, 31969661 - 31969561
Alignment:
Q  49 ggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactatatt 148  Q
    ||||||| ||||||||||||||||||| || ||||||| || || ||||||| |||||||  |||||||| | | ||||||||||||| |||||||||||    
T  31969661 ggttaagaaagccaaaagaagaaattgtaagtcaaaaa-gacacattttaaatttttaatttattgattaaataactttcaatgcaaatattactatatt 31969563  T
Q  149 ta 150  Q
    ||    
T  31969562 ta 31969561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 45 - 150
Target Start/End: Complemental strand, 42939383 - 42939278
Alignment:
Q  45 tactggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattacta 144  Q
    ||||||||||| |||| |||||| ||||||  || | ||||| || ||||||||||||||||||||||||| |||||| |||| |||||||| | ||| |    
T  42939383 tactggttaagaaagctaaaagaggaaattttaatttaaaaatgatactttttaaacttttaatgcattgactacacaacttttaatgcaaatactacca 42939284  T
Q  145 tattta 150  Q
    ||||||    
T  42939283 tattta 42939278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 31452223 - 31452326
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactat 145  Q
    |||||||||||||| ||||||||||||||  |||||||||| || | ||||||| |||||||||||||||  ||||  ||||| ||||||| | ||| ||    
T  31452223 actggttaaggaagtcaaaagaagaaattttaactcaaaaatgacattttttaagcttttaatgcattgacaacactactttcgatgcaaatactaccat 31452322  T
Q  146 attt 149  Q
    ||||    
T  31452323 attt 31452326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 141
Target Start/End: Complemental strand, 31974299 - 31974208
Alignment:
Q  49 ggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaatta 141  Q
    ||||||| ||||| ||||||||||||| || || ||||||| || ||||||| ||| |||  |||||||||| | ||||||||| ||| ||||    
T  31974299 ggttaagaaagcctaaagaagaaattgtaagtc-aaaaagacacattttaaattttaaatttattgattacataactttcaatgtaaatatta 31974208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 7e-27; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 53 - 149
Target Start/End: Original strand, 4601368 - 4601465
Alignment:
Q  53 aaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaa-attactatattt 149  Q
    ||||||||||||||||||||||  || |||||||||| |||||||||| ||||||||||||||||||||| ||||||||| |||| ||||||||||||    
T  4601368 aaggaagccaaaagaagaaatttgaaatcaaaaaagatactttttaaatttttaatgcattgattacacaactttcaatgtaaaatattactatattt 4601465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 159
Target Start/End: Original strand, 3435733 - 3435843
Alignment:
Q  49 ggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactatatt 148  Q
    |||||| ||||| |||||||||||||  || |||||||||| |||||||||  || |||||||||||||||| | ||||||||||||| |||||||||||    
T  3435733 ggttaaagaagctaaaagaagaaattataaatcaaaaaagacactttttaagtttataatgcattgattacataactttcaatgcaaatattactatatt 3435832  T
Q  149 tattctcttaa 159  Q
    | || ||||||    
T  3435833 tgttttcttaa 3435843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 115
Target Start/End: Original strand, 33755635 - 33755704
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattga 115  Q
    |||||||||||||||||||||| ||||||  |||||||||| || ||||||||| |||||||||||||||    
T  33755635 actggttaaggaagccaaaagaggaaattttaactcaaaaatgacactttttaagcttttaatgcattga 33755704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 50 - 149
Target Start/End: Original strand, 7246539 - 7246637
Alignment:
Q  50 gttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactatattt 149  Q
    |||||||| || |||||||||||||  || | |||||||| | ||||||| ||||||||| |||||||||||| || |||||||||| | ||||||||||    
T  7246539 gttaaggatgctaaaagaagaaattctaaattaaaaaagatattttttaagcttttaatgtattgattacacaactatcaatgcaaata-tactatattt 7246637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 20621746 - 20621824
Alignment:
Q  48 tggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatcttt 127  Q
    |||||||||||||||||| ||||||||   | ||||||  |||||||||||||||||||||| ||||| |||||| ||||    
T  20621746 tggttaaggaagccaaaa-aagaaattttgagtcaaaattgaaactttttaaacttttaatgtattgaatacacaacttt 20621824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 88 - 149
Target Start/End: Complemental strand, 12057522 - 12057460
Alignment:
Q  88 gaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaa-attactatattt 149  Q
    |||||||||||||||||||||| ||||| |||||| |||| ||| ||||| ||||||||||||    
T  12057522 gaaactttttaaacttttaatgtattgaatacacaacttttaatacaaaatattactatattt 12057460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 142
Target Start/End: Complemental strand, 5583698 - 5583605
Alignment:
Q  49 ggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattac 142  Q
    |||||||||||| ||||||  |||||  || | ||||| || | ||||||| | |||||||||||||||||||| |||| | |||||| |||||    
T  5583698 ggttaaggaagcaaaaagataaaattttaaataaaaaatgatattttttaagcatttaatgcattgattacacaactttgattgcaaatattac 5583605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 21622646 - 21622749
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactat 145  Q
    ||||||||||||||||||||||| |||||| || | |||||||| | |||| ||| ||||||||||||||||||||| ||||||||| ||| ||||||||    
T  21622646 actggttaaggaagccaaaagaaaaaattgtaagttaaaaaagacatttttcaaatttttaatgcattgattacacaactttcaatgtaaatattactat 21622745  T
Q  146 attt 149  Q
    ||||    
T  21622746 attt 21622749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 149
Target Start/End: Original strand, 44655049 - 44655150
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactat 145  Q
    |||||||||||||||||||||||||||||  || |  ||||||| | |||||| ||||||||||||||||||||| | ||| ||||||||| ||||||||    
T  44655049 actggttaaggaagccaaaagaagaaattaaaaat--aaaaagatattttttatacttttaatgcattgattacagaacttccaatgcaaatattactat 44655146  T
Q  146 attt 149  Q
    ||||    
T  44655147 attt 44655150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 45096811 - 45096893
Alignment:
Q  50 gttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatg 132  Q
    |||||||||| ||||||||||||||| || | |||||| | || ||||||||||||||| ||||||||||||| |||| ||||    
T  45096811 gttaaggaagtcaaaagaagaaattgtaagttaaaaaatatacattttaaacttttaatacattgattacacagcttttaatg 45096893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 49 - 149
Target Start/End: Original strand, 28115646 - 28115748
Alignment:
Q  49 ggttaaggaagccaaaagaagaaattgcaactcaaaaaaga-aactttttaaacttttaatgcattgattacacatctttcaatgcaaaa-attactata 146  Q
    |||||||||||||||||||| |||||| || | |||||||| |  ||||||||||||||||||||| | | |||| |||||||| ||||| |||| ||||    
T  28115646 ggttaaggaagccaaaagaaaaaattgtaaataaaaaaagacatttttttaaacttttaatgcattcactgcacagctttcaatacaaaatattattata 28115745  T
Q  147 ttt 149  Q
    |||    
T  28115746 ttt 28115748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 149
Target Start/End: Original strand, 38616895 - 38616993
Alignment:
Q  51 ttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactatattt 149  Q
    ||||||||| |||||||||||| |  || |||||||||| |||| ||||  |||||||| |||||||||||| ||||||||  ||| |||| |||||||    
T  38616895 ttaaggaaggcaaaagaagaaagtaaaagtcaaaaaagatacttgttaatattttaatgtattgattacacaactttcaatataaatattagtatattt 38616993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 149
Target Start/End: Complemental strand, 3525382 - 3525339
Alignment:
Q  106 aatgcattgattacacatctttcaatgcaaaaattactatattt 149  Q
    ||||||||||||| ||| ||||||||||||| ||||||||||||    
T  3525382 aatgcattgattatacaactttcaatgcaaatattactatattt 3525339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 94 - 137
Target Start/End: Original strand, 31938963 - 31939006
Alignment:
Q  94 ttttaaacttttaatgcattgattacacatctttcaatgcaaaa 137  Q
    |||||||||||||||| |||||||||||| |||| |||||||||    
T  31938963 ttttaaacttttaatgtattgattacacaacttttaatgcaaaa 31939006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 40319988 - 40320055
Alignment:
Q  82 aaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactatattt 149  Q
    ||||| || |||||||  |||||||| | ||||||||||||  ||||||||||||||||| |||||||    
T  40319988 aaaaatgatacttttttgacttttaaagaattgattacacaaatttcaatgcaaaaattattatattt 40320055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 46 - 149
Target Start/End: Complemental strand, 20869452 - 20869349
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactat 145  Q
    ||||||||||||||||||||||  |||||  || | ||||| || ||||||||| |||||||||||||||||||||| ||||||||||||| | ||| ||    
T  20869452 actggttaaggaagccaaaagagaaaattttaatttaaaaatgacactttttaagcttttaatgcattgattacacaactttcaatgcaaatactaccat 20869353  T
Q  146 attt 149  Q
    ||||    
T  20869352 attt 20869349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 141
Target Start/End: Complemental strand, 36784321 - 36784224
Alignment:
Q  44 atactggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgcaaaaatta 141  Q
    |||| |||||||||||  ||||||||||| |  || | ||||| || ||||||||| ||||||||| |||||||||||| ||||||||||||| ||||    
T  36784321 ataccggttaaggaagaaaaaagaagaaagtaaaagttaaaaaggacactttttaatcttttaatgtattgattacacagctttcaatgcaaatatta 36784224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 82 - 134
Target Start/End: Original strand, 3426190 - 3426242
Alignment:
Q  82 aaaaaagaaactttttaaacttttaatgcattgattacacatctttcaatgca 134  Q
    |||||||| ||||||||||||||||||||||||||| || | |||||||||||    
T  3426190 aaaaaagatactttttaaacttttaatgcattgatttcataactttcaatgca 3426242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 6204377 - 6204276
Alignment:
Q  62 aaaagaagaaattgcaactcaaaaaagaaa---ctttttaaacttttaatgcattgattacacatctttcaatgcaaaaattactatatttattctctta 158  Q
    |||| |||||||||||| | |||||||| |   |||||||| |||||||||| |||||||||||  ||| ||||||||| ||| ||||||| ||| ||||    
T  6204377 aaaaaaagaaattgcaaattaaaaaagatattgctttttaagcttttaatgctttgattacacagtttttaatgcaaaagttattatatttgttccctta 6204278  T
Q  159 at 160  Q
    ||    
T  6204277 at 6204276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 93 - 136
Target Start/End: Complemental strand, 19253976 - 19253933
Alignment:
Q  93 tttttaaacttttaatgcattgattacacatctttcaatgcaaa 136  Q
    |||| |||||||||||||||||| |||||| |||||||||||||    
T  19253976 ttttaaaacttttaatgcattgactacacaactttcaatgcaaa 19253933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 120
Target Start/End: Original strand, 57589 - 57664
Alignment:
Q  46 actggttaaggaagccaaaagaagaaattgcaactcaaaaaagaaactttt-taaacttttaatgcattgattaca 120  Q
    ||||||||| |||| ||||||| ||||||  ||||||||||  | |||||| ||||||||||||||||||||||||    
T  57589 actggttaaagaaggcaaaagaggaaattttaactcaaaaataacacttttttaaacttttaatgcattgattaca 57664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University