View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19914_high_14 (Length: 247)
Name: NF19914_high_14
Description: NF19914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19914_high_14 |
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Alignment Details
Target: chr6 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 176361 - 176591
Alignment:
| Q |
1 |
aataaagattcttggactaaatcgttcactcttccattcgccgaattcgttggtcttgatggcgtctgcattactcggctttatatttctgaggaggacc |
100 |
Q |
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| T |
176361 |
aataaagattcttggactaaattgttcactcttccatttgccgaattcgttggtcttgatggcgtctgcattactcggctttatatttctgaggaggacc |
176460 |
T |
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| Q |
101 |
accaagtgttcgtggacttcaacaataaggtatatgtttacaattacaagactggtgcagtaaagaatcccaagattcaaggcctcccatgtatttcctt |
200 |
Q |
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| T |
176461 |
accaagtgttcgtgtacttcatcaataaggtatatgtttacaattacaagactggtgcagtaaagaatcccaagattcaaggcctcccatgtatttcctt |
176560 |
T |
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| Q |
201 |
caactcaaatatctatcttgagagttccttc |
231 |
Q |
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| T |
176561 |
caactcaaatatctatcttgagagttccttc |
176591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 188
Target Start/End: Complemental strand, 1453787 - 1453677
Alignment:
| Q |
78 |
gctttatatttctgaggaggaccaccaagtgttcgtggacttcaacaataaggtatatgtttacaattacaagactggtgcagtaaagaatcccaagatt |
177 |
Q |
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| T |
1453787 |
gctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaagaatcgtaccctaaagattcctaagatt |
1453688 |
T |
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| Q |
178 |
caaggcctccc |
188 |
Q |
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| T |
1453687 |
caaggcctccc |
1453677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 78 - 188
Target Start/End: Complemental strand, 1465479 - 1465369
Alignment:
| Q |
78 |
gctttatatttctgaggaggaccaccaagtgttcgtggacttcaacaataaggtatatgtttacaattacaagactggtgcagtaaagaatcccaagatt |
177 |
Q |
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| T |
1465479 |
gctttatatttccgaggaggatggccaagtgttcttcgacttaaattatgaggtatatgtttacaattacaagaatcgtaccctaaagattcctaagatt |
1465380 |
T |
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| Q |
178 |
caaggcctccc |
188 |
Q |
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| T |
1465379 |
caaggcctccc |
1465369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 1459476 - 1459403
Alignment:
| Q |
78 |
gctttatatttctgaggaggaccaccaagtgttcgtggacttcaacaataaggtatatgtttacaattacaaga |
151 |
Q |
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| T |
1459476 |
gctttatatttctgaggaagatgaccaagtggtcctagatttctataataagatatatgtttacaattacaaga |
1459403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 2442066 - 2442098
Alignment:
| Q |
1 |
aataaagattcttggactaaatcgttcactctt |
33 |
Q |
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| T |
2442066 |
aataaagattcttggactaaattgttcactctt |
2442098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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