View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19914_high_7 (Length: 339)

Name: NF19914_high_7
Description: NF19914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19914_high_7
NF19914_high_7
[»] chr3 (11 HSPs)
chr3 (18-339)||(5155092-5155416)
chr3 (52-179)||(46490019-46490146)
chr3 (52-248)||(46469608-46469804)
chr3 (52-247)||(4582498-4582693)
chr3 (52-262)||(46478194-46478404)
chr3 (65-179)||(46497336-46497450)
chr3 (52-138)||(47398314-47398400)
chr3 (39-168)||(45900894-45901023)
chr3 (78-240)||(16023873-16024035)
chr3 (52-133)||(47414958-47415039)
chr3 (79-174)||(46507147-46507245)
[»] chr2 (3 HSPs)
chr2 (79-267)||(20154323-20154511)
chr2 (78-266)||(20143419-20143607)
chr2 (78-262)||(20169903-20170087)
[»] chr4 (4 HSPs)
chr4 (52-205)||(35160480-35160633)
chr4 (78-179)||(15555057-15555158)
chr4 (66-174)||(37147405-37147513)
chr4 (77-210)||(35154084-35154217)
[»] chr8 (3 HSPs)
chr8 (78-209)||(9677662-9677793)
chr8 (78-268)||(9693403-9693596)
chr8 (29-135)||(21465916-21466022)
[»] chr6 (1 HSPs)
chr6 (52-179)||(16967864-16967991)
[»] chr7 (2 HSPs)
chr7 (65-125)||(17734557-17734617)
chr7 (65-129)||(17743793-17743857)


Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 18 - 339
Target Start/End: Complemental strand, 5155416 - 5155092
Alignment:
Q  18 agagcacgacagaaacaagttgagaggcaagatcgttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||    
T  5155416 agagcacgacagaaacaagttgagaggcaagatcgttgagatggtcagtggatttggacaggaggaagtcgagaagctgttgttgtgtgggaccctcaga 5155317  T
Q  118 gccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttcttgtgtaattctttcaagaacagatgtttggcgatgcgtagg 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  5155316 gccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttcttgtctaattctttcaagaacagatgtttggcgatgcgtagg 5155217  T
Q  218 gaaacattagtttggttggtaattgattcacagagagccattgttc---ttctttctcgattaagaccaaagactatggctttaaatagaggtttaaata 314  Q
    |||||||| ||||||||||| |||||||||  ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  5155216 gaaacatttgtttggttggtgattgattcatggagagccattgttctttttctttctcgattaagaccaaagactatggctttaaatagaggtttgaata 5155117  T
Q  315 tcctgagatgcaagaaataacatac 339  Q
    ||||  | |||||||||||||||||    
T  5155116 tcctacgctgcaagaaataacatac 5155092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 52 - 179
Target Start/End: Complemental strand, 46490146 - 46490019
Alignment:
Q  52 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 151  Q
    |||||| || || ||||| ||||| ||||||||||| |||||||| ||||||||||  || ||||||||||||||||||||||| ||||||||||| ||     
T  46490146 gttgagttgatcggtggagttagattggaggaagtcaagaagctgttgttgtgtggagccgtcagagccagcagcgatgatgctgagtacaacttggagc 46490047  T
Q  152 gacagtggcgaaaacacaatgttcttgt 179  Q
    || |||||||| ||||||||||||||||    
T  46490046 gaaagtggcgataacacaatgttcttgt 46490019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 52 - 248
Target Start/End: Complemental strand, 46469804 - 46469608
Alignment:
Q  52 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 151  Q
    ||||||||||||  ||||||| ||  ||||||| |||||||| || ||||||||  ||||||||||| |||||||||  ||| | || | |||||| ||     
T  46469804 gttgagatggtcgatggatttggaacggaggaattcgagaagttgttgttgtgtacgaccctcagaggcagcagcgacaatgttgagcataacttggagt 46469705  T
Q  152 gacagtggcgaaaacacaatgttcttgtgtaattctttcaagaacagatgtttggcgatgcgtagggaaacattagtttggttggtaattgattcac 248  Q
    ||||| ||||||||||||| |||||||| | |||||||  |||| ||||||||||| |||   |||||||| || ||||||||||| ||||||||||    
T  46469704 gacagcggcgaaaacacaacgttcttgtctgattcttttgagaagagatgtttggccatgttaagggaaactttggtttggttggtgattgattcac 46469608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 52 - 247
Target Start/End: Original strand, 4582498 - 4582693
Alignment:
Q  52 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 151  Q
    ||||||||| ||||| ||||| ||  | ||||||||||||||||| | |  |||||| || ||||||||||||||||| ||||| ||  ||||||| ||     
T  4582498 gttgagatgatcagttgatttggagagaaggaagtcgagaagctgttctcttgtgggtccgtcagagccagcagcgatcatgctgagcgcaacttggagc 4582597  T
Q  152 gacagtggcgaaaacacaatgttcttgtgtaattctttcaagaacagatgtttggcgatgcgtagggaaacattagtttggttggtaattgattca 247  Q
    || ||||| ||||||||||||||||| | | |||||||  |||| |||| ||||||||| |  |||||||| || |||||||| || |||||||||    
T  4582598 gaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggttagtgattgattca 4582693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 262
Target Start/End: Complemental strand, 46478404 - 46478194
Alignment:
Q  52 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 151  Q
    ||||||||| || |||||||| || || ||||||| || ||| || ||||| |||||||||||||| |||| |||||| || ||||| |||||||| ||     
T  46478404 gttgagatgatcggtggatttggattgaaggaagttgaaaagttgttgttgagtgggaccctcagaaccagaagcgattatacttagcacaacttggagt 46478305  T
Q  152 gacagtggcgaaaacacaatgttcttgtgtaattctttcaagaacagatgtttggcgatgcgtagggaaacattagtttggttggtaattgattcacaga 251  Q
    || ||||| |||||||| ||||| |||| | |||||||  |||| |||||||| || | ||  || || || || ||||||||||  ||||||||||  |    
T  46478304 gaaagtggagaaaacacgatgttgttgtctgattctttggagaagagatgttttgcaacgctgagtgatacgttggtttggttggctattgattcacgaa 46478205  T
Q  252 gagccattgtt 262  Q
    || ||||||||    
T  46478204 gatccattgtt 46478194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 65 - 179
Target Start/End: Complemental strand, 46497450 - 46497336
Alignment:
Q  65 gtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaa 164  Q
    |||||||| || |||||||||| |||||| || ||||||||||| ||||| ||||||| ||||||||||||||| |||||||| || || ||||| || |    
T  46497450 gtggatttggattggaggaagttgagaagttgttgttgtgtggggccctcggagccagtagcgatgatgcttagcacaacttgtagtgaaagtggagata 46497351  T
Q  165 acacaatgttcttgt 179  Q
    |||| || |||||||    
T  46497350 acaccatattcttgt 46497336  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 52 - 138
Target Start/End: Original strand, 47398314 - 47398400
Alignment:
Q  52 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttag 138  Q
    ||||||||| |||||||| || |||   ||||||||||||||||  |||||||||||||||||||||||||||||| ||||||||||    
T  47398314 gttgagatgttcagtggacttggacccaaggaagtcgagaagctcttgttgtgtgggaccctcagagccagcagcgttgatgcttag 47398400  T

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Target: chr3; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 39 - 168
Target Start/End: Complemental strand, 45901023 - 45900894
Alignment:
Q  39 gagaggcaagatcgttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttag 138  Q
    ||||||||| |  |||||||||||| ||||||| | | |||||||||| || |||||| |||||||| ||||||||||  |||||||| |||||||| ||    
T  45901023 gagaggcaaaagagttgagatggtcggtggattcaaattggaggaagtggataagctgctgttgtgttggaccctcagcaccagcagcaatgatgctgag 45900924  T
Q  139 tacaacttgaagagacagtggcgaaaacac 168  Q
     | |||||| || || ||||| ||||||||    
T  45900923 aataacttggagcgagagtggagaaaacac 45900894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 78 - 240
Target Start/End: Complemental strand, 16024035 - 16023873
Alignment:
Q  78 ggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttctt 177  Q
    ||||||||| ||||||||| |||||||| || ||||| || ||||||||||| | ||| || ||||||||||| || || || |||||||  ||||| ||    
T  16024035 ggaggaagtggagaagctgttgttgtgtcggtccctcggatccagcagcgataaggctgagaacaacttgaagtgatagcggagaaaacatgatgttatt 16023936  T
Q  178 gtgtaattctttcaagaacagatgtttggcgatgcgtagggaaacattagtttggttggtaat 240  Q
    || | ||| |||  | || ||||||||| |||||   ||||| || || ||||||||||||||    
T  16023935 gtctgattgttttgaaaagagatgtttgacgatgttgagggatacgttggtttggttggtaat 16023873  T

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Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 133
Target Start/End: Original strand, 47414958 - 47415039
Alignment:
Q  52 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatg 133  Q
    ||||||||| ||| ||||||| ||   |||||||||||||||||  || ||||||| ||||||||||||||| || ||||||    
T  47414958 gttgagatgatcaatggattttgagccgaggaagtcgagaagcttttgatgtgtggtaccctcagagccagccgcaatgatg 47415039  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 174
Target Start/End: Original strand, 46507147 - 46507245
Alignment:
Q  79 gaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcg---atgatgcttagtacaacttgaagagacagtggcgaaaacacaatgtt 174  Q
    ||||||||| |||| ||| ||||| ||||||||||||||||| ||||||   |||||||| || | ||||||||  || ||||| ||||||| ||||||    
T  46507147 gaggaagtcaagaatctgttgttgagtgggaccctcagagccggcagcgattatgatgctgagaataacttgaatcgagagtggtgaaaacataatgtt 46507245  T

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Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 79 - 267
Target Start/End: Complemental strand, 20154511 - 20154323
Alignment:
Q  79 gaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttcttg 178  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||||||| ||| ||| |  |||||||| || |||| ||||||||||||||||||||||    
T  20154511 gaggaagtcgacaagctgttgttgtgtgggaccttcagagccagcagcggtgaggctgaacacaacttggagtgacactggcgaaaacacaatgttcttg 20154412  T
Q  179 tgtaattctttcaagaacagatgtttggcgatgcgtagggaaacattagtttggttggtaattgattcacagagagccattgttcttct 267  Q
    | | ||| |||||||||||||||||||||||||   ||| |||| ||  |||||||||| ||||||||   |||||||| |||||||||    
T  20154411 tctgattgtttcaagaacagatgtttggcgatgtcgaggaaaacctttatttggttggtgattgattcttggagagccactgttcttct 20154323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 78 - 266
Target Start/End: Complemental strand, 20143607 - 20143419
Alignment:
Q  78 ggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttctt 177  Q
    |||||||||||| ||| || |||||||||||| | ||||| ||||||||||| | ||| || |||| ||| || || |||||||||||||| ||||||||    
T  20143607 ggaggaagtcgacaagttgttgttgtgtgggatcttcagaaccagcagcgataaggctgagcacaatttggagtgatagtggcgaaaacacgatgttctt 20143508  T
Q  178 gtgtaattctttcaagaacagatgtttggcgatgcgtagggaaacattagtttggttggtaattgattcacagagagccattgttcttc 266  Q
    || | ||| |||||| ||||||||| ||||||||   |||||||| || |||||||| || ||||||||    ||||||||||||||||    
T  20143507 gtctgattgtttcaacaacagatgtctggcgatgtcgagggaaacctttgtttggttagtgattgattcttgaagagccattgttcttc 20143419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 262
Target Start/End: Original strand, 20169903 - 20170087
Alignment:
Q  78 ggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttctt 177  Q
    |||||||||||| ||| || |||| ||||||||| ||||| |||| ||| || | ||| || |||| |||||| || ||||| |||||||| | ||| ||    
T  20169903 ggaggaagtcgacaagttgttgttttgtgggaccttcagaaccagtagcaataaggctgagcacaatttgaagtgatagtggtgaaaacacgacgttttt 20170002  T
Q  178 gtgtaattctttcaagaacagatgtttggcgatgcgtagggaaacattagtttggttggtaattgattcacagagagccattgtt 262  Q
    || | ||| |||||| ||||||||| |||| |||   |||||||| || |||||||| || ||||||||   |||||||||||||    
T  20170003 gtctgattgtttcaacaacagatgtctggccatgtcgagggaaacctttgtttggttagtgattgattcttggagagccattgtt 20170087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 52 - 205
Target Start/End: Complemental strand, 35160633 - 35160480
Alignment:
Q  52 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 151  Q
    ||||||||| |||||||||||  |  |||||||||| |||||||| |||||||| | ||||||||||||||||| ||| ||||| || |||||||| |||    
T  35160633 gttgagatgatcagtggatttgaaacggaggaagtcaagaagctgttgttgtgttgaaccctcagagccagcagtgattatgctgagcacaacttggaga 35160534  T
Q  152 gacagtggcgaaaacacaatgttcttgtgtaattctttcaagaacagatgtttg 205  Q
    |||| |||||||||||| |||||||| | | |||||||  |||| |||||||||    
T  35160533 gacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgtttg 35160480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 78 - 179
Target Start/End: Complemental strand, 15555158 - 15555057
Alignment:
Q  78 ggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttctt 177  Q
    |||||||||||||||| || || ||||||| ||||||||||||||||||||||||||| || | ||||||||  || || || |||||||||||||| ||    
T  15555158 ggaggaagtcgagaagttgttgctgtgtggaaccctcagagccagcagcgatgatgctgagaataacttgaatcgagagaggtgaaaacacaatgttgtt 15555059  T
Q  178 gt 179  Q
    ||    
T  15555058 gt 15555057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 66 - 174
Target Start/End: Complemental strand, 37147513 - 37147405
Alignment:
Q  66 tggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaa 165  Q
    |||||||| | | ||||||||||||||  || ||||||||||||||||  |||||||||||||| || ||||| |||||||| || ||||  ||||||||    
T  37147513 tggatttaaagtcgaggaagtcgagaatttgttgttgtgtgggacccttggagccagcagcgataatacttagaacaacttggagcgacaagggcgaaaa 37147414  T
Q  166 cacaatgtt 174  Q
    |||||||||    
T  37147413 cacaatgtt 37147405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 77 - 210
Target Start/End: Complemental strand, 35154217 - 35154084
Alignment:
Q  77 tggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttct 176  Q
    |||||||||| ||||||||| ||| |||||| ||| ||||||||||||||||||||    || || ||||| |||||||  ||||||||||| || ||||    
T  35154217 tggaggaagttgagaagctgttgtcgtgtggaaccgtcagagccagcagcgatgattgcaagcactacttggagagacaaaggcgaaaacacgatattct 35154118  T
Q  177 tgtgtaattctttcaagaacagatgtttggcgat 210  Q
    | | | |||| ||  |||| ||||||||||||||    
T  35154117 tttctgattcctttgagaaaagatgtttggcgat 35154084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 78 - 209
Target Start/End: Original strand, 9677662 - 9677793
Alignment:
Q  78 ggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttctt 177  Q
    ||||||||||||||||||| ||||| || |||||||||||||||||||||||||| || || |||||||| ||||||| ||| ||||| || | ||| ||    
T  9677662 ggaggaagtcgagaagctgttgttgagtaggaccctcagagccagcagcgatgatactgagaacaacttggagagacaatggtgaaaagacgacgttgtt 9677761  T
Q  178 gtgtaattctttcaagaacagatgtttggcga 209  Q
    || | |||||||  |||| |||||||||||||    
T  9677762 gtctgattcttttgagaagagatgtttggcga 9677793  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 78 - 268
Target Start/End: Original strand, 9693403 - 9693596
Alignment:
Q  78 ggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaagagacagtggcgaaaacacaatgttctt 177  Q
    |||||||||| |||||||| ||||| || ||||| ||||||||| ||||||||||||| || |||||||| ||||||| ||| ||||| || |  |||||    
T  9693403 ggaggaagtcaagaagctgttgttgagtaggaccgtcagagccaacagcgatgatgctgagaacaacttggagagacaatggtgaaaagacgacattctt 9693502  T
Q  178 gtgtaattctttcaagaacagatgtttggcgatgcgtagggaaacattagtttggttggtaattgattca-ca--gagagccattgttcttctt 268  Q
    || | |||||||  |||| |||||||||||||||   |||||||  || | |||||||||  |||||||| ||  | |||||||||||||||||    
T  9693503 gtctgattcttttgagaagagatgtttggcgatggtgagggaaaatttcgcttggttggtgcttgattcatcaaggtgagccattgttcttctt 9693596  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 29 - 135
Target Start/End: Original strand, 21465916 - 21466022
Alignment:
Q  29 gaaacaagttgagaggcaagatcgttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcga 128  Q
    |||||||| ||||||||||  | ||| ||||  |||||||| || || ||||||||   |||||| || |||||||| ||||| ||||||||||||||||    
T  21465916 gaaacaagctgagaggcaaagtagtttagattttcagtggacttggattggaggaatgagagaagttgttgttgtgtcggaccttcagagccagcagcga 21466015  T
Q  129 tgatgct 135  Q
    |||||||    
T  21466016 tgatgct 21466022  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 179
Target Start/End: Original strand, 16967864 - 16967991
Alignment:
Q  52 gttgagatggtcagtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgatgatgcttagtacaacttgaaga 151  Q
    ||||||||| ||  ||||||| || |||||||| | || ||| || ||||| |||||||||||||| |||  |||||| |||||||  |||||||| ||     
T  16967864 gttgagatgatcgatggatttggattggaggaatttgaaaagttgttgttgagtgggaccctcagaaccaaaagcgattatgcttaacacaacttggagt 16967963  T
Q  152 gacagtggcgaaaacacaatgttcttgt 179  Q
    || ||||| |||||||| ||||| ||||    
T  16967964 gagagtggtgaaaacacgatgttgttgt 16967991  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 125
Target Start/End: Complemental strand, 17734617 - 17734557
Alignment:
Q  65 gtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcag 125  Q
    ||||||| |||||||||||||  |||||| |||| ||||||||||||||| ||||| ||||    
T  17734617 gtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggcag 17734557  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 129
Target Start/End: Complemental strand, 17743857 - 17743793
Alignment:
Q  65 gtggatttagactggaggaagtcgagaagctggtgttgtgtgggaccctcagagccagcagcgat 129  Q
    ||||||| |||||||||||||  |||||| |||| ||||||||||||||| ||||| | ||||||    
T  17743857 gtggattcagactggaggaaggagagaagttggttttgtgtgggaccctcggagccggtagcgat 17743793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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