View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19914_high_8 (Length: 333)
Name: NF19914_high_8
Description: NF19914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19914_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 45303603 - 45303906
Alignment:
| Q |
1 |
agttcatgggtcttgatgagttttgggtccataagtctagttgttactgtggttgtggtggacatgctagctgtaggacaagaagaagttaactgcatca |
100 |
Q |
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| T |
45303603 |
agttcatgggtcttgatgagttttgggtccataagtctagttgttactgtggttgtggtggacatgctagctgtaggacaagaagaagttaactgcatca |
45303702 |
T |
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| Q |
101 |
tatgccacgtggcattcctttccataaagtttcttctttgctgtaattctgcttcatcgaattggagccatccatctgcttt---tgctgctgctgacct |
197 |
Q |
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| T |
45303703 |
tatgccacgtggcattcctttccataaagtttcttctttgctgtaattctgcttcatcgaattggagccatccatctgcttttgctgctgctgctgacct |
45303802 |
T |
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| Q |
198 |
ttgaattgaaacagattcctgtagaaacaaagaaagaatttaattaacctcaacacaaaaactaaaacatagggcatgcacggatttcaaatgagcatgc |
297 |
Q |
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| T |
45303803 |
ttgaattgaaacagattcctgtagaaacaaagaaagaatttaattaacctcaactcaaaaactaaaacatagggcatgcacgaatttcaaatgagcatgc |
45303902 |
T |
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| Q |
298 |
actc |
301 |
Q |
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|||| |
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| T |
45303903 |
actc |
45303906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 178
Target Start/End: Original strand, 45150590 - 45150682
Alignment:
| Q |
86 |
aagttaactgcatcatatgccacgtggcattcctttccataaagtttcttctttgctgtaattctgcttcatcgaattggagccatccatctg |
178 |
Q |
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| T |
45150590 |
aagttaacagcatcatatgccacatgacattcctttccataaagtttctttcttgctgtagttcagcttcatcaaattggagccgtctatctg |
45150682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 24 - 70
Target Start/End: Original strand, 45150446 - 45150492
Alignment:
| Q |
24 |
tgggtccataagtctagttgttactgtggttgtggtggacatgctag |
70 |
Q |
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| T |
45150446 |
tgggtccattagtgtagttgttactgtggttgtgatggccatgctag |
45150492 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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