View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19914_low_10 (Length: 290)
Name: NF19914_low_10
Description: NF19914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19914_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 2 - 276
Target Start/End: Complemental strand, 35159546 - 35159272
Alignment:
| Q |
2 |
tagggattaaattagagagaaagtgataatttatagaccaagttgatggcttattcaacaataattgataataaaaacaagagaaagtaagtaccttcaa |
101 |
Q |
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| T |
35159546 |
tagggattaaattagagagacagtgataatttatagaccaagttgatggcttattcaacaataaatgataataaaaacaagagaaaataagtaccttcaa |
35159447 |
T |
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| Q |
102 |
attttgattttgatacccatgtattccatctaatcttctagctcgggtgattcaataataacttgtttgatgtgtgatatcttgggccaatcctgtccaa |
201 |
Q |
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| T |
35159446 |
attttgattttgatacccatgaattccatctaatcttctagctcgggtgattcaataataacttgtttgatgtgtgatatcttgggccaatcctgtccaa |
35159347 |
T |
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| Q |
202 |
cttttgtttcgtatcttctacacaattcaggacaacctttaattttcaaatattcaaggtttcggaggtgatgca |
276 |
Q |
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| T |
35159346 |
cttttgtttcgtatcttctacacaattcaggacaacctttaattttcaaatattcaaggtttcggaggtgatgca |
35159272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 160 - 269
Target Start/End: Complemental strand, 29752267 - 29752158
Alignment:
| Q |
160 |
taacttgtttgatgtgtgatatcttgggccaatcctgtccaacttttgtttcgtatcttctacacaattcaggacaacctttaattttcaaatattcaag |
259 |
Q |
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| T |
29752267 |
taacttgtttgatgtgtgaaatcttgggccaatcatgtcctacctttggctggtatcttttacataattcaggacaatctttcatttctaagcattcaag |
29752168 |
T |
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| Q |
260 |
gtttcggagg |
269 |
Q |
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| T |
29752167 |
gtttgggagg |
29752158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 165 - 240
Target Start/End: Original strand, 29594110 - 29594185
Alignment:
| Q |
165 |
tgtttgatgtgtgatatcttgggccaatcctgtccaacttttgtttcgtatcttctacacaattcaggacaacctt |
240 |
Q |
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| T |
29594110 |
tgtttgatgtgtgatatcttgggccaatcatgtcctacctctggctggtatcttctacataattcaggacaacctt |
29594185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 160 - 269
Target Start/End: Original strand, 29601027 - 29601136
Alignment:
| Q |
160 |
taacttgtttgatgtgtgatatcttgggccaatcctgtccaacttttgtttcgtatcttctacacaattcaggacaacctttaattttcaaatattcaag |
259 |
Q |
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| T |
29601027 |
taactcgtttgatgtgtgaaatcttgggccaatcatgtcctacctttggctggtatcttttacataattcaggacaatctttcatttctaagcattcaag |
29601126 |
T |
|
| Q |
260 |
gtttcggagg |
269 |
Q |
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|||| ||||| |
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| T |
29601127 |
gtttgggagg |
29601136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 32782390 - 32782464
Alignment:
| Q |
162 |
acttgtttgatgtgtgatatcttgggccaatcctgtccaacttttgtttcgtatcttctacacaattcaggacaa |
236 |
Q |
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| T |
32782390 |
acttgtttgatgtgtgatatcttgtgccaatcacgtccaactcctgcctggtatcttctacataattcaggacaa |
32782464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 162 - 236
Target Start/End: Complemental strand, 49353870 - 49353796
Alignment:
| Q |
162 |
acttgtttgatgtgtgatatcttgggccaatcctgtccaacttttgtttcgtatcttctacacaattcaggacaa |
236 |
Q |
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| T |
49353870 |
acttgtttgatgtgtgatatcttgtgccaatcatgtccgacttcaggctggtatcttctacataattctggacaa |
49353796 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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