View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19914_low_3 (Length: 565)
Name: NF19914_low_3
Description: NF19914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19914_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 3 - 549
Target Start/End: Original strand, 6626800 - 6627356
Alignment:
| Q |
3 |
atcctcattaatcaaaaggactatttttacatatcttttttgagcaactcactctcatttacttcaatggtacaactcttaagaactctgtatttgaaag |
102 |
Q |
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| T |
6626800 |
atcctcattaatcaaaaggactatttttacatatcttttttgagcaactcactctcatttacttcaatggtacaactcttaagaactctgtatttgaaag |
6626899 |
T |
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| Q |
103 |
gcatctacgtcgcggtggcctagtgcgccccaacttgggcgggcgtactgggccacaacaatttaatacccttcattggagtagttctaacataatcatt |
202 |
Q |
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| T |
6626900 |
gcatctacgtcgcggtggcctagtgcgccccaacttgggcgggcgtactgggccacaacaatttaatacccttcattggagtagttctaacataatcatt |
6626999 |
T |
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| Q |
203 |
gataactaatatgagtttgatgacattaataattt----tnnnnnnnntgaaagtccattgtctaattaacttaacctaacaaaatcctcaaaatgaatt |
298 |
Q |
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| T |
6627000 |
gataactaatatgagtttgatgacattaataatttaaaaaaaaaaaaatgaaagtccattgtctaattaacttaacctaacaaaatcctcaaaatgaatt |
6627099 |
T |
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| Q |
299 |
acctgcgcattttaaatccaacgggaagagaaccaacacc------aacatcagattccgtgactctaccagaagcttctctcggcgacggggatggccc |
392 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| || |
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| T |
6627100 |
acctgcgcattttaaatccaacgggaagagaaccaacaccaacattaacatcagattccgtgactctaccagaagcttctctcggcgacagggatggtcc |
6627199 |
T |
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| Q |
393 |
agaagcttctttcggcaatggcgacggcaaccgacaatcaacatctctttgccttaacaacccaccaggtgactccggcaacggcaacggctgaggtgca |
492 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6627200 |
agaagcttctttcggcaatggcgacggcaaccgacaatcagcatctctttgccttaacaacccaccaggtgactccggcaacggcaacggctgaggtgca |
6627299 |
T |
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| Q |
493 |
acggaggaagaagtattagaccgaatataaccccgtgcactcggagaccgttgaatc |
549 |
Q |
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| T |
6627300 |
acggaggaagaagtattagaccgaatataaccccgtgcactcggagaccgttgaatc |
6627356 |
T |
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