View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19914_low_5 (Length: 426)
Name: NF19914_low_5
Description: NF19914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19914_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 14 - 412
Target Start/End: Complemental strand, 4475709 - 4475293
Alignment:
| Q |
14 |
agcaaaggccggcatcaataaactaaaaagtaggctctaattgaatgaaacacaactattggtatcgaccttcaaccacttctaagaccctttcttctca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4475709 |
agcaaaggccggcatcaataaactaaaaagtaggctctaattgaatgaaacacaactattggtatcgaccttcaaccacttctaagaccctttcttctca |
4475610 |
T |
|
| Q |
114 |
caacaacttccctatcacacacgccaaaaataacacacactactttt--actcttttattacctctt-----------------ccttgttcattctcct |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |||||||| |
|
|
| T |
4475609 |
caacaacttccctatcacacacgccaaaaataacacacactacttttttactcttttattacctcttttttctttaatcctcttccttgttaattctcct |
4475510 |
T |
|
| Q |
195 |
aaaaaagtcttctctcnnnnnnnnnnnnngtctataagaaacatcatatctttaggtaaccacatgttattatactttttaaatagaaattcactataaa |
294 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4475509 |
aaaaaagtcttctctctttttctttttttgtctataagaaacatcatatctttaggtaaccacatgttattatactttttaaatagaaaatcactataaa |
4475410 |
T |
|
| Q |
295 |
aactaattaggaacaaaaaattgacataaataatatgaaatcaatttagggacgaccttagtggagtagtagtattagttgggacattaaaagtatatta |
394 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4475409 |
aactaattaggaa-aaaaaattgacataaataatatgaaatcaatttagggacgaccttagtggagtagtagtattagttgggacattaaaagtatatta |
4475311 |
T |
|
| Q |
395 |
catagataggatgtccaa |
412 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
4475310 |
catagataggaggtccaa |
4475293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University