View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19914_low_6 (Length: 419)
Name: NF19914_low_6
Description: NF19914
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19914_low_6 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Complemental strand, 176125 - 175719
Alignment:
| Q |
1 |
caatgaacgctgccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgccta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
176125 |
caatgaacgctgccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgccta |
176026 |
T |
|
| Q |
101 |
aagtgtgagccttaacttgagttttgtaaatttcattttgaaatattccacgagatatatagctagaaacagcaactaccttgtaagtatgggtaaattg |
200 |
Q |
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|||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
176025 |
aagtgtgaaccttaacttgagttttgtaaacatcattttgaa---ttccacgagatatatagctagaaacagcaactaccttgtaagtatgggtaaattg |
175929 |
T |
|
| Q |
201 |
agcgtcatacccaatggtgtatgcaatttgtagacttttctcgaaatccaaagagggcaatatattgaatttggtggtacaagggttccatagtagcgga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
175928 |
agcgtcatacccaatggtgtatgcaatttgtagacttttctcgaaatccaaagagggcaatatattgaatttggtggtacaagggttccatagtagcgga |
175829 |
T |
|
| Q |
301 |
tcaccacagtcgaatctgtcatcgatgg-ttgaagacagatgatgccatcgcaagagtcagctatgatagcacgaatgttagaaggatttagaggaaagt |
399 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
175828 |
tcaccacagtcgaatctgtcatcgatggtttgaagacagatgatgccatcgcaagagtcagctatgatagcacgaatgttagaaggatttagaggaaagt |
175729 |
T |
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| Q |
400 |
tgagcttcat |
409 |
Q |
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|||||||||| |
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| T |
175728 |
tgagcttcat |
175719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 7564992 - 7565106
Alignment:
| Q |
12 |
gccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagcc |
111 |
Q |
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||||||||||||||| |||||| ||||| |||| |||| || || ||||||||||||||||||||||||||| ||| | |||||||| ||| || |
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| T |
7564992 |
gccacttacaaatttcccaacacgtccttcaggtacacccttgttttcagaagggaagtctggaatccttctccaaacattgctacctaaagtatgaacc |
7565091 |
T |
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| Q |
112 |
ttaacttgagttttg |
126 |
Q |
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||||||||||||||| |
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| T |
7565092 |
ttaacttgagttttg |
7565106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 1471188 - 1471278
Alignment:
| Q |
36 |
cccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
126 |
Q |
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| T |
1471188 |
cccttcgggttgacccatgagctgagaagggaagtcttgaatcgttctccaaaaattgttacctaaagtatgaaccttaactagagttttg |
1471278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 40659 - 40724
Alignment:
| Q |
61 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
126 |
Q |
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| T |
40659 |
gaagggaagtcttcaatccttctccaagagttggtgcccaaagtatgaactttaacttgagttttg |
40724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 126
Target Start/End: Complemental strand, 55419543 - 55419478
Alignment:
| Q |
61 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
126 |
Q |
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| T |
55419543 |
gaagggaagtctggtatccttttccaaaagttggtacctaaagtatgagccctaacttgagttttg |
55419478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 3926870 - 3926760
Alignment:
| Q |
11 |
tgccacttacaaatttgccaacattcccttcgggtatacccatgagttgcgaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagc |
110 |
Q |
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|||||||||||||||| ||||||| ||| | ||||| |||||||| | |||||||||| ||||||||| |||||| | ||||| |||| ||| ||| | |
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| T |
3926870 |
tgccacttacaaatttcccaacatacccattgggtaaacccatgatatttgaagggaagtttggaatcctcctccaaaaattggtacctagagtatgaac |
3926771 |
T |
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| Q |
111 |
cttaacttgag |
121 |
Q |
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| T |
3926770 |
cctaacttgag |
3926760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 129
Target Start/End: Original strand, 1421453 - 1421520
Alignment:
| Q |
61 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttgtaa |
129 |
Q |
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| T |
1421453 |
gaagggaagtccttaatccttctccaagagttggtgcc-aaagtatgaacttcaacttgagttttgtaa |
1421520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 126
Target Start/End: Original strand, 24233688 - 24233753
Alignment:
| Q |
61 |
gaagggaagtctggaatccttctccaagagttggtgcctaaagtgtgagccttaacttgagttttg |
126 |
Q |
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| T |
24233688 |
gaagggaagtccttaatccttctccaagagtcggtacctaatgtatgaactttaacttgagttttg |
24233753 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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