View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_high_1 (Length: 743)
Name: NF19915_high_1
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 21 - 430
Target Start/End: Original strand, 3929113 - 3929520
Alignment:
| Q |
21 |
aagctctagaatatagggaacgaatcgacagtggtggaaggatggaacgacattaatcaacaggggttaaatgaaggatggacgtaaaatttgacaggat |
120 |
Q |
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| T |
3929113 |
aagctctagaatatagggagcgaattgacagtggtggaaggatggaatgacattaatcaacaggcgttaactgaaggatggaagtaaaatttgacaggat |
3929212 |
T |
|
| Q |
121 |
caaatactaatttgacatatttgagagcgccctacaaagtcaaagacaagcttgatgatttactcaacaattatgtcttgagaattgcctctacactata |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3929213 |
caaatactaatttgacatatttgagagcgccctacaaagtcaaagacaagcttggtgatttactcaacaattatgtcttgagaattgcctctacactata |
3929312 |
T |
|
| Q |
221 |
caaaagctattgagaatcaaaatacattagatactctttctttcnnnnnnngtatcagtacatttgatagccttgggagaggcttatcacaccattgcca |
320 |
Q |
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| T |
3929313 |
caaaagctattgagaatcaaaatacattagatactc--tctttctttttttgtatcagtacatttgatagccttgggagaggcttatcacaacattgcca |
3929410 |
T |
|
| Q |
321 |
aagctcaattactgtatatttcagtgttgtctattaattaatcattgcataccaggtttttattgctaaattgatttagtgtagtaaatttgactacctg |
420 |
Q |
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| T |
3929411 |
aagctcaattagtgtatatttcagtgttgcctattaactaatcaatgcataccaggtttttattgctaaattgatttagtgtagtaaatttgactacctg |
3929510 |
T |
|
| Q |
421 |
ataaatgatt |
430 |
Q |
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| T |
3929511 |
ataaatgatt |
3929520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 468 - 743
Target Start/End: Original strand, 3929628 - 3929902
Alignment:
| Q |
468 |
atatccatagacaacttcgatattaaaattgaagcaaaatttcccaacttcaaagctaaaaagcaacaaattagttactatgatcaaattttcatcaaat |
567 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3929628 |
atatccatagacaacttcaatattaaaattgaagcaaaatttcccaacgtcaaagctaaaaagcaacaaattagttactatgatcgaattttcatcaaat |
3929727 |
T |
|
| Q |
568 |
caagttaaacaaaattgaaaattagtttgaacaattaaatgcaatcaatttgattaagtatcatagattcaacagatcaattcaaaattcaagattcact |
667 |
Q |
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| T |
3929728 |
caagttaaacaaaattgaaaattagtttgaacaattaaatgcaatcaatttgattaagtatcatagattcaacagatcaattcaaaattcaagattcact |
3929827 |
T |
|
| Q |
668 |
ttttccaagagaaattagattcaaatcctaacnnnnnnnntaaaactctatcatctaaacatctaaagaaaataac |
743 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3929828 |
ttttccaagagaaattagattcaaatcctaac-aacaaaataaaactctatcatctaaacatctaaagaaaataac |
3929902 |
T |
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