View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_high_11 (Length: 488)
Name: NF19915_high_11
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 19 - 480
Target Start/End: Complemental strand, 34318401 - 34317940
Alignment:
| Q |
19 |
aagaataatctcctgaagcatacaaatttttaggaacttcaggaataagccttggatcataatactctgacatctctatattctgcatgtcaaagttcat |
118 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34318401 |
aagaataatctcctgaagcatacaaattggtaggaacttcaggaataagccttggatcataatactctgacatctctatattctgcatgtcaaagttcat |
34318302 |
T |
|
| Q |
119 |
atcatagtattcaccttgtaacaagaacaaatttaagtcctcgtccaaaggtgttgaagctgactcaatacccaaaagtaagtttctttggtagatttcc |
218 |
Q |
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| T |
34318301 |
atcatagtattcaccttgtaacaagaacaaatttaagtcctcgtccaaaggtgttgaagctgactcaatacccaaaagtaagtttctttggtagatttcc |
34318202 |
T |
|
| Q |
219 |
atatcagaagcgcagccaagattaaattttggtgtttttaaactcaaatttgaagtgaaaatgatatcgcttttggactgactaggaaaggtatcaactg |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34318201 |
atatcagaagcgcagccaagattaaattttggtgtttttaaactcaaatttgaagtgaaaatgatatcgcttttggactgactaggaaaggtatcaactg |
34318102 |
T |
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| Q |
319 |
aagacaccgttgaattcacaggtctaatgtaatcacttttgtaactggagggattggaattaattgatagtgatcggtcattttggaagtgttgctgtgt |
418 |
Q |
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| T |
34318101 |
aagacaccgttgaattcacaggtctaatgtaatcacttttgtaaccggagggattggaattaattgatagtgatcggtcattttggaagtgttgctgtgt |
34318002 |
T |
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| Q |
419 |
aacatttaatggcaaatggctgagattatcctttaattgtacaagtgtgttaagttcttctc |
480 |
Q |
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| T |
34318001 |
aacatttaatggcaaatggctgagattatcctttaattgtacaagtgtgttaagttcttctc |
34317940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 287 - 468
Target Start/End: Complemental strand, 26376159 - 26375978
Alignment:
| Q |
287 |
gcttttggactgactaggaaaggtatcaactgaagacaccgttgaattcacaggtctaatgtaatcacttttgtaactggagggattggaattaattgat |
386 |
Q |
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|||||||||| |||||| |||||||||| ||||||||| | |||||||||||| |||||||||||||| |||||| |||||||| ||||||||||| |
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| T |
26376159 |
gcttttggacggactagaaaaggtatcatctgaagacatcattgaattcacagaactaatgtaatcactgttgtaatgagagggattagaattaattgaa |
26376060 |
T |
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| Q |
387 |
agtgatcggtcattttggaagtgttgctgtgtaacatttaatggcaaatggctgagattatcctttaattgtacaagtgtgt |
468 |
Q |
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| T |
26376059 |
attgattggtaaatttggaagtgttgttgtgtaacatttaatggcaaatggatgagattgtcctttaattgtacaagtgtgt |
26375978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 286 - 384
Target Start/End: Complemental strand, 35680779 - 35680681
Alignment:
| Q |
286 |
cgcttttggactgactaggaaaggtatcaactgaagacaccgttgaattcacaggtctaatgtaatcacttttgtaactggagggattggaattaattg |
384 |
Q |
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|||||||||||||||||||||||||||||||||| |||||| ||||||||||| | |||| |||||||| |||||| |||||||||||||||||||| |
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| T |
35680779 |
cgcttttggactgactaggaaaggtatcaactgatgacaccattgaattcacaagattaatctaatcactgttgtaatgggagggattggaattaattg |
35680681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 401 - 479
Target Start/End: Complemental strand, 35680683 - 35680602
Alignment:
| Q |
401 |
ttggaagtgttgctgtgtaacatttaatggcaaatggctgag---attatcctttaattgtacaagtgtgttaagttcttct |
479 |
Q |
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|||||||||||| |||||||||||||| |||||||||| ||| || |||||||||||||||||||||| | |||||||| |
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| T |
35680683 |
ttggaagtgttgttgtgtaacatttaacggcaaatggcggagtaatttgtcctttaattgtacaagtgtgtcacgttcttct |
35680602 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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