View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_high_13 (Length: 463)
Name: NF19915_high_13
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 12 - 403
Target Start/End: Original strand, 43174207 - 43174598
Alignment:
| Q |
12 |
atgaatgaatttcataatcatgcttcaggaacttaacttccagcggtttaattggaactatagcttctgggatatccaatctgaagtcaatagagagttc |
111 |
Q |
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| T |
43174207 |
atgaatgaatttcataatcatgcttcaggaacttaacttccagcggtttaattggaactatagcttctgggatatccaatctgaagtcaatagagagttc |
43174306 |
T |
|
| Q |
112 |
ttgaatctattatgtacacgaaaaacaaatagcaagctagtaagttgatcacaaaaatgatgcatactcttaaagttgagtaaaaacattttgctccaat |
211 |
Q |
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| T |
43174307 |
ttgaatctattatgtacacgaaaaacaaatagcaagctagtaagttgatcactaaaatgaagcatactcttaaagttgagtaaaaacattttgttccaat |
43174406 |
T |
|
| Q |
212 |
attagggatttgtcagataacaatttgactggtgcagtgccagatttcctatctcagctgtgcttcttgagagttctgtaagtcaactatcttcatctgg |
311 |
Q |
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| T |
43174407 |
attagggatttgtcagataacaatttgactggtgcagtgccagatttcctatctcagctgcgcttcttgagagttctgtaagtcaactatcttcatctgg |
43174506 |
T |
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| Q |
312 |
ttatcgtaggtggacttgattattcaattaattttattgcttgagttgttcaaaatatcatcttggtgagaatgaaagcatgtaaagagtaa |
403 |
Q |
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| T |
43174507 |
ttatcgtaggtggacttgattattcaattaattttattgcttgagttgttcaaaatatcatcttggtgagaatgaaagcatgtaaagagtaa |
43174598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 43223263 - 43222969
Alignment:
| Q |
20 |
atttcataatcatgcttcaggaacttaacttccagcggtttaattggaactatagcttctgggatatccaatctgaagtcaatagag--------agttc |
111 |
Q |
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| T |
43223263 |
atttcataatcatgctttaggaacttaacttccagcggtttaattggaactatagcttctgggatatccaatctgaagtcaatagaatatttgtaagttc |
43223164 |
T |
|
| Q |
112 |
ttgaatctattatgtacacgaaaaacaaatagcaagctagtaagttgatcacaaaaatgatgcatactcttaaagttgagtaaaaacattttgctccaat |
211 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
43223163 |
ttgaatctattatgtacacaaaaaacaaatagcaagctaataagttgatcccaaaaatgaagcatactcttaaagttgagtaaaaacattttgttccaat |
43223064 |
T |
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| Q |
212 |
attagggatttgtcagataacaatttgactggtgcagtgccagatttcctatctcagctgtgcttcttgagagttctgtaagtcaactatcttca |
306 |
Q |
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| T |
43223063 |
tttagggatttgtcaaataacaatttgactggagctgtgcctgatttcctatctcagccgcgcttcttgagagttctgtaagtcaactttcttca |
43222969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 182 - 314
Target Start/End: Original strand, 43164670 - 43164802
Alignment:
| Q |
182 |
taaagttgagtaaaaacattttgctccaatattagggatttgtcagataacaatttgactggtgcagtgccagatttcctatctcagctgtgcttcttga |
281 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| ||||||||| |
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| T |
43164670 |
taaagttgagtaaaaacattttgttccaattttagggatttgtcaaataacaatttgactggtgctgtgccagatttcctatctcagctgcgcttcttga |
43164769 |
T |
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| Q |
282 |
gagttctgtaagtcaactatcttcatctggtta |
314 |
Q |
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| T |
43164770 |
gagttctgtaagtcaactatcttcatatggtta |
43164802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 43164508 - 43164594
Alignment:
| Q |
19 |
aatttcataatcatgcttcaggaacttaacttccagcggtttaattggaactatagcttctgggatatccaatctgaagtcaataga |
105 |
Q |
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| T |
43164508 |
aatttcataaccatgctttaggaacttaacttccagcggtttaattggaactatagctgctggcatatccaatctgaagtccataga |
43164594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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