View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_high_2 (Length: 701)
Name: NF19915_high_2
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 351
Target Start/End: Complemental strand, 14393638 - 14393299
Alignment:
| Q |
13 |
aatattacagggttattggagagtttgctgacaaatattctttaactaa-ttcgccccaaaattattgnnnnnnnctatatgattctaatcttttttatt |
111 |
Q |
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| T |
14393638 |
aatattacagggttattggagagtttgccgacaaatattatttaactaaattcgcactaaaattattatttttttctatatgattctaatctcttttatt |
14393539 |
T |
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| Q |
112 |
aaattatttttgatctctgtaaaataaataaaaaatggtttaacaaatagggaaggatatggtcaaattcaaacagtcaaagttcagaaaatttgttctc |
211 |
Q |
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| T |
14393538 |
aaattattttttatctctgcaaaataaataaaaaatggtttaacaaatagggaaggatatggtcaaattcaaacagtcaaagttcagaaaatttgttctc |
14393439 |
T |
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| Q |
212 |
atgtgtttgttcgtgcaaggaatttctgaaagcaaactgcacagacaacttaatactaatccaacctagcacgttatctataaaatcatgaatagcatga |
311 |
Q |
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| T |
14393438 |
atgtgtttgttcgtgcaaggaatttctgaaagcaaactgcacagataatttaatactaatccaacctagcacgttatctacagaattatgaatagcatga |
14393339 |
T |
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| Q |
312 |
cttgaattcaataacttcaaataaatgcgaaggaagagta |
351 |
Q |
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| T |
14393338 |
cttgacttcaataacttcaaataaatgttaaggaagagta |
14393299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 525 - 685
Target Start/End: Complemental strand, 14392767 - 14392607
Alignment:
| Q |
525 |
gtatttatttattcattatcattcacacattattcatattttctctttatgtgttcatctttactgtcacatccaactgactgagatactatcatttttc |
624 |
Q |
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| T |
14392767 |
gtatttatttatttattatcattcacacattattcatattttctctttatgtgttcatctttactgtcacatccaactgactgagatactatcatttttc |
14392668 |
T |
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| Q |
625 |
aattgaaaaatcttcgacaaagtatagtattataattattgatattcatgataaatatgat |
685 |
Q |
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| T |
14392667 |
aattgaaaaatcttcgacaaagcatagtattataattattattattcatgataaatatgat |
14392607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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