View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19915_high_23 (Length: 368)

Name: NF19915_high_23
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19915_high_23
NF19915_high_23
[»] chr3 (2 HSPs)
chr3 (14-278)||(49290004-49290277)
chr3 (308-356)||(38231406-38231455)
[»] chr2 (4 HSPs)
chr2 (308-356)||(37914265-37914313)
chr2 (308-356)||(36315675-36315724)
chr2 (308-340)||(3830925-3830957)
chr2 (308-340)||(16089952-16089984)
[»] chr4 (2 HSPs)
chr4 (308-340)||(44275837-44275869)
chr4 (308-356)||(46192473-46192522)
[»] scaffold0043 (1 HSPs)
scaffold0043 (308-340)||(87190-87222)
[»] chr5 (1 HSPs)
chr5 (308-347)||(27553401-27553441)


Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 14 - 278
Target Start/End: Complemental strand, 49290277 - 49290004
Alignment:
Q  14 tcactaacaacgtttgagaagacactgaagaatggagctagtgatggagaggaagaagataactcaatatcatcatcatca---------cggaggaaaa 104  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||    
T  49290277 tcactaacaacgtttgagaagacactgaagaatggagctagtgatggagaggaagaagataactcaatatcatcatcatcatcatcatcacggaggaaaa 49290178  T
Q  105 gcaacgtgattgtaagaggagttctatcggtcactgtaatttcagctgaagacttaccaatagtagattttatgggcaaggctgacccatttgttgtcct 204  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49290177 gcaacgtgattgtaagaggagttctatcggtcactgtaatttcagctgaagacttaccaatagtagattttatgggcaaggctgacccatttgttgtcct 49290078  T
Q  205 tgcattgaaaaaatcagaaaagaaacaaaagacccgagtaagtaagacttatgatgttattgggtttttaaata 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49290077 tgcattgaaaaaatcagaaaagaaacaaaagacccgagtaagtaagacttatgatgttattgggtttttaaata 49290004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 38231455 - 38231406
Alignment:
Q  308 atacacctcttatgtacaccccatgtgtta-gggtattttaatcatttca 356  Q
    |||||||||||||||||||||||||||| | ||||| |||| ||||||||    
T  38231455 atacacctcttatgtacaccccatgtgtcaggggtagtttagtcatttca 38231406  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 37914265 - 37914313
Alignment:
Q  308 atacacctcttatgtacaccccatgtgttagggtattttaatcatttca 356  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||||    
T  37914265 atacacctcttatgtacaccccatgtaccagggtattttaatcatttca 37914313  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 36315724 - 36315675
Alignment:
Q  308 atacacctcttatgtacaccccatgtgtta-gggtattttaatcatttca 356  Q
    |||||||||||||||||||| ||||||| | |||||||||||||||||||    
T  36315724 atacacctcttatgtacacctcatgtgtcaggggtattttaatcatttca 36315675  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 340
Target Start/End: Original strand, 3830925 - 3830957
Alignment:
Q  308 atacacctcttatgtacaccccatgtgttaggg 340  Q
    |||||||||||||||||||||||||||||||||    
T  3830925 atacacctcttatgtacaccccatgtgttaggg 3830957  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 340
Target Start/End: Complemental strand, 16089984 - 16089952
Alignment:
Q  308 atacacctcttatgtacaccccatgtgttaggg 340  Q
    |||||||||||||||||||||||||||||||||    
T  16089984 atacacctcttatgtacaccccatgtgttaggg 16089952  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 340
Target Start/End: Complemental strand, 44275869 - 44275837
Alignment:
Q  308 atacacctcttatgtacaccccatgtgttaggg 340  Q
    |||||||||||||||||||||||||||||||||    
T  44275869 atacacctcttatgtacaccccatgtgttaggg 44275837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 46192522 - 46192473
Alignment:
Q  308 atacacctcttatgtacaccccatgtgtta-gggtattttaatcatttca 356  Q
    ||||||||||||||||||||||||||   | |||||||||||||||||||    
T  46192522 atacacctcttatgtacaccccatgtaccaggggtattttaatcatttca 46192473  T

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Target: scaffold0043 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 340
Target Start/End: Original strand, 87190 - 87222
Alignment:
Q  308 atacacctcttatgtacaccccatgtgttaggg 340  Q
    |||||||| ||||||||||||||||||||||||    
T  87190 atacaccttttatgtacaccccatgtgttaggg 87222  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 347
Target Start/End: Original strand, 27553401 - 27553441
Alignment:
Q  308 atacacctcttatgtacaccccatgtgttagg-gtatttta 347  Q
    ||||||||||||||||||||| |||||||||| ||||||||    
T  27553401 atacacctcttatgtacaccctatgtgttaggagtatttta 27553441  T

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