View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19915_high_26 (Length: 350)

Name: NF19915_high_26
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19915_high_26
NF19915_high_26
[»] chr3 (5 HSPs)
chr3 (199-350)||(7238805-7238957)
chr3 (13-154)||(7239011-7239152)
chr3 (198-290)||(41361354-41361446)
chr3 (192-242)||(7238945-7238995)
chr3 (197-242)||(17647752-17647797)
[»] chr5 (4 HSPs)
chr5 (192-288)||(32303655-32303751)
chr5 (142-173)||(35447085-35447116)
chr5 (203-244)||(8254755-8254796)
chr5 (197-237)||(42923937-42923977)
[»] chr4 (11 HSPs)
chr4 (147-248)||(6083667-6083767)
chr4 (197-237)||(36138985-36139025)
chr4 (197-287)||(42096778-42096869)
chr4 (193-242)||(30211951-30212000)
chr4 (193-242)||(37182235-37182284)
chr4 (197-287)||(36139016-36139107)
chr4 (149-244)||(42096700-42096794)
chr4 (192-237)||(53979061-53979106)
chr4 (199-244)||(55301391-55301436)
chr4 (192-236)||(23806243-23806287)
chr4 (197-237)||(56210958-56210998)
[»] chr2 (2 HSPs)
chr2 (195-287)||(13387367-13387459)
chr2 (195-242)||(44069891-44069938)
[»] chr6 (3 HSPs)
chr6 (197-250)||(2744163-2744216)
chr6 (194-237)||(2146778-2146821)
chr6 (194-242)||(3607022-3607070)
[»] chr8 (4 HSPs)
chr8 (201-290)||(15020034-15020123)
chr8 (197-291)||(5995179-5995274)
chr8 (199-237)||(5995150-5995188)
chr8 (197-242)||(157550-157595)
[»] scaffold0254 (1 HSPs)
scaffold0254 (194-237)||(23239-23282)
[»] chr1 (6 HSPs)
chr1 (194-237)||(10608940-10608983)
chr1 (142-173)||(27664051-27664082)
chr1 (194-244)||(31847696-31847746)
chr1 (195-282)||(622841-622929)
chr1 (194-242)||(622913-622961)
chr1 (192-244)||(14210649-14210701)
[»] chr7 (1 HSPs)
chr7 (147-181)||(3557227-3557261)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 199 - 350
Target Start/End: Complemental strand, 7238957 - 7238805
Alignment:
Q  199 tgagttaactcacgcatgtgcatttt-caacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctcaaatgataat 297  Q
    |||||||| ||||| | ||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7238957 tgagttaagtcacgtaggtgcatttttcaacgtgagttaaatcacgttggatgtgaattaacaaaaatggatgggagaagagcaattctcaaatgataat 7238858  T
Q  298 gcttataagataacgctagcatgcgaatattatagtgttaatgttatttataa 350  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  7238857 gcttataagataacaccagcatgcgaatattatagtgttaatgttatttataa 7238805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 13 - 154
Target Start/End: Complemental strand, 7239152 - 7239011
Alignment:
Q  13 aatataacatactgctagagaaacaaaagcagataatggactcacaacaaaatgaagttccctcatcatccaactctaatggatcacatgtctcccctag 112  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | | || |||||||||||||||||||||||||||||||    
T  7239152 aatacaacatactgctagagaaacaaaaggagataatggactcacaacaaaatgaagttccattaccacccaactctaatggatcacatgtctcccctag 7239053  T
Q  113 taagtttctacatacataggataaatgataagataattgctc 154  Q
    ||||||||||||||||||||| ||||||||||||||||||||    
T  7239052 taagtttctacatacataggaaaaatgataagataattgctc 7239011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 290
Target Start/End: Original strand, 41361354 - 41361446
Alignment:
Q  198 gtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctcaaa 290  Q
    |||| |||||||||  | |||||||||||||| ||||||| |||||| ||| | |||| ||||||||   | |||||||||||||||| ||||    
T  41361354 gtgaattaactcacataggtgcattttcaacgcgagttaactcacataggacgggaatgaacaaaaacaaaagggagaagagcaattcccaaa 41361446  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 242
Target Start/End: Complemental strand, 7238995 - 7238945
Alignment:
Q  192 tcgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 242  Q
    |||||||||| |||||||||| | ||| ||||||||| |||||||||||||    
T  7238995 tcgagcgtgaattaactcacgtaagtgtattttcaacatgagttaagtcac 7238945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Original strand, 17647752 - 17647797
Alignment:
Q  197 cgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 242  Q
    |||||||||||||||| | ||||||||||||||||| |||| ||||    
T  17647752 cgtgagttaactcacgtaggtgcattttcaacgtgatttaactcac 17647797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 9e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 192 - 288
Target Start/End: Original strand, 32303655 - 32303751
Alignment:
Q  192 tcgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctca 288  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| |||||| ||| |  ||| | |||||| |||||||||||||||||||||||    
T  32303655 tcgagcgtgagttaactcacgcatgtgtattttcagcgtgagttaactcacataggacggaaatgagcaaaaacggatgggagaagagcaattctca 32303751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 173
Target Start/End: Complemental strand, 35447116 - 35447085
Alignment:
Q  142 aagataattgctcttctcccatttagaattgc 173  Q
    ||||||||||||||||||||||||||||||||    
T  35447116 aagataattgctcttctcccatttagaattgc 35447085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 244
Target Start/End: Original strand, 8254755 - 8254796
Alignment:
Q  203 ttaactcacgcatgtgcattttcaacgtgagttaagtcacat 244  Q
    ||||||||||||||||||||||||  ||||||||| ||||||    
T  8254755 ttaactcacgcatgtgcattttcagtgtgagttaactcacat 8254796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 42923977 - 42923937
Alignment:
Q  197 cgtgagttaactcacgcatgtgcattttcaacgtgagttaa 237  Q
    |||| ||||||||| ||| ||||||||||||||||||||||    
T  42923977 cgtgtgttaactcatgcaggtgcattttcaacgtgagttaa 42923937  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 6083667 - 6083767
Alignment:
Q  147 aattgctcttctcccatttagaattgctcgttcctgtnnnnnnnntcgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacattg 246  Q
    |||||||||||||||||||||||||||||||||| ||        || || ||||||||||||||||| ||||||||||  |||||||||| |||| |||    
T  6083667 aattgctcttctcccatttagaattgctcgttcccgt-caaaaagtcaagtgtgagttaactcacgcaggtgcattttcggcgtgagttaactcacgttg 6083765  T
Q  247 ga 248  Q
    ||    
T  6083766 ga 6083767  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Original strand, 36138985 - 36139025
Alignment:
Q  197 cgtgagttaactcacgcatgtgcattttcaacgtgagttaa 237  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36138985 cgtgagttaactcacgcatgtgcattttcaacgtgagttaa 36139025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 287
Target Start/End: Original strand, 42096778 - 42096869
Alignment:
Q  197 cgtgagttaactcacgcatgtgcatttt-caacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctc 287  Q
    |||||||||||||||  | ||||||||| || |||||||||| |||| ||||||  |||| | ||||||| |||||||||||||||||||||    
T  42096778 cgtgagttaactcacataggtgcatttttcagcgtgagttaactcacgttggataggaatgagcaaaaatagatgggagaagagcaattctc 42096869  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Original strand, 30211951 - 30212000
Alignment:
Q  193 cgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 242  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  30211951 cgagcatgagttaactcacacatgtgcattttcaacgtgagttaactcac 30212000  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 242
Target Start/End: Complemental strand, 37182284 - 37182235
Alignment:
Q  193 cgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 242  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  37182284 cgagcgtaagttaactcacacatgtgcattttcaacgtgagttaactcac 37182235  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 287
Target Start/End: Original strand, 36139016 - 36139107
Alignment:
Q  197 cgtgagttaactcacgcatgtgcatttt-caacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctc 287  Q
    |||||||||||||| | ||||| ||||| || |||||||||| |||  ||||||| |||| | ||||||   ||||||||||||||||||||    
T  36139016 cgtgagttaactcatgtatgtgaatttttcagcgtgagttaactcatgttggatgagaatgagcaaaaacatatgggagaagagcaattctc 36139107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 244
Target Start/End: Original strand, 42096700 - 42096794
Alignment:
Q  149 ttgctcttctcccatttagaattgctcgttcctgtnnnnnnnntcgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacat 244  Q
    ||||||||||||| |||||||||||||||||  ||        |||| |||||||||||||||| |  | ||||||||||||||||||| ||||||    
T  42096700 ttgctcttctcccgtttagaattgctcgttctcgtagaaaag-tcgaacgtgagttaactcacgtagatacattttcaacgtgagttaactcacat 42096794  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 237
Target Start/End: Original strand, 53979061 - 53979106
Alignment:
Q  192 tcgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaa 237  Q
    |||| ||||||||||||||| |||||| ||||||| ||||||||||    
T  53979061 tcgaacgtgagttaactcacacatgtgtattttcagcgtgagttaa 53979106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 55301391 - 55301436
Alignment:
Q  199 tgagttaactcacgcatgtgcattttcaacgtgagttaagtcacat 244  Q
    ||||||| ||||||||||| ||||||||||||||||| | ||||||    
T  55301391 tgagttagctcacgcatgtacattttcaacgtgagttgactcacat 55301436  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 23806243 - 23806287
Alignment:
Q  192 tcgagcgtgagttaactcacgcatgtgcattttcaacgtgagtta 236  Q
    |||| |||||||||||||||| | ||| |||||||||||||||||    
T  23806243 tcgaacgtgagttaactcacgtaggtgtattttcaacgtgagtta 23806287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 56210998 - 56210958
Alignment:
Q  197 cgtgagttaactcacgcatgtgcattttcaacgtgagttaa 237  Q
    ||||||||||||||| | |||| ||||||||||||||||||    
T  56210998 cgtgagttaactcacacgtgtgtattttcaacgtgagttaa 56210958  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 287
Target Start/End: Original strand, 13387367 - 13387459
Alignment:
Q  195 agcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctc 287  Q
    |||||||||||||||||| ||||| ||||||| | |||||||| |||| | ||| | |||| ||||||||| |||| ||||||| ||||||||    
T  13387367 agcgtgagttaactcacgtatgtgtattttcatcatgagttaactcacgtaggacgagaatgaacaaaaatagatgagagaagaacaattctc 13387459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 44069891 - 44069938
Alignment:
Q  195 agcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 242  Q
    |||||||||||||||||||| ||| |||||||||||||||||| ||||    
T  44069891 agcgtgagttaactcacgcaggtgtattttcaacgtgagttaactcac 44069938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 250
Target Start/End: Original strand, 2744163 - 2744216
Alignment:
Q  197 cgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacattggatg 250  Q
    |||||||||||||||||||||||||||| |||||||||||| |||  |||||||    
T  2744163 cgtgagttaactcacgcatgtgcatttttaacgtgagttaactcatgttggatg 2744216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 2146778 - 2146821
Alignment:
Q  194 gagcgtgagttaactcacgcatgtgcattttcaacgtgagttaa 237  Q
    |||||||||| |||||||||||||| | ||||||||||||||||    
T  2146778 gagcgtgagtgaactcacgcatgtgtaatttcaacgtgagttaa 2146821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 3607070 - 3607022
Alignment:
Q  194 gagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 242  Q
    |||||||| || ||||||||||||| ||||| |||||||||||| ||||    
T  3607070 gagcgtgaattgactcacgcatgtgtatttttaacgtgagttaactcac 3607022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 290
Target Start/End: Complemental strand, 15020123 - 15020034
Alignment:
Q  201 agttaactcacgcatgtgcattttcaacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctcaaa 290  Q
    |||||||| ||||| ||| ||||||||||||| |||| |||  |||||| | ||| | ||||||  ||| ||||||||||||||||||||    
T  15020123 agttaacttacgcaggtgtattttcaacgtgaattaactcatgttggatataaatgagcaaaaacagataggagaagagcaattctcaaa 15020034  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 197 - 291
Target Start/End: Original strand, 5995179 - 5995274
Alignment:
Q  197 cgtgagttaactcacgcatgtgcatttt-caacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctcaaat 291  Q
    ||||||||||||| |  ||||| ||||| || |||||||||| |||| ||| |  ||||| | ||||||  |||||||||||||||||||||||||    
T  5995179 cgtgagttaactcgcatatgtgtatttttcagcgtgagttaactcacgttgaacatgaatgagcaaaaaaagatgggagaagagcaattctcaaat 5995274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 199 - 237
Target Start/End: Original strand, 5995150 - 5995188
Alignment:
Q  199 tgagttaactcacgcatgtgcattttcaacgtgagttaa 237  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  5995150 tgagttaactcacgcatgtgtattttcgacgtgagttaa 5995188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 242
Target Start/End: Complemental strand, 157595 - 157550
Alignment:
Q  197 cgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 242  Q
    ||||| |||||||||||||||||||||||||  |||||||| ||||    
T  157595 cgtgaattaactcacgcatgtgcattttcaatatgagttaattcac 157550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 237
Target Start/End: Original strand, 23239 - 23282
Alignment:
Q  194 gagcgtgagttaactcacgcatgtgcattttcaacgtgagttaa 237  Q
    |||||||||| |||||||||||||| | ||||||||||||||||    
T  23239 gagcgtgagtgaactcacgcatgtgtaatttcaacgtgagttaa 23282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 194 - 237
Target Start/End: Complemental strand, 10608983 - 10608940
Alignment:
Q  194 gagcgtgagttaactcacgcatgtgcattttcaacgtgagttaa 237  Q
    |||||||||||||||||||||| |||||||| ||||||| ||||    
T  10608983 gagcgtgagttaactcacgcatatgcatttttaacgtgaattaa 10608940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 142 - 173
Target Start/End: Complemental strand, 27664082 - 27664051
Alignment:
Q  142 aagataattgctcttctcccatttagaattgc 173  Q
    ||||||||||||||||||||||||||||||||    
T  27664082 aagataattgctcttctcccatttagaattgc 27664051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 244
Target Start/End: Complemental strand, 31847746 - 31847696
Alignment:
Q  194 gagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacat 244  Q
    |||| |||||||||||||||| ||||||||| | |||||||||| ||||||    
T  31847746 gagcatgagttaactcacgcaagtgcatttttaccgtgagttaactcacat 31847696  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 282
Target Start/End: Complemental strand, 622929 - 622841
Alignment:
Q  195 agcgtgagttaactcacgcatgtgcatttt-caacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaa 282  Q
    |||||||||||||||||| | ||| ||||| ||||||||||||| |||| | ||| | |||| | ||||||   |||||||||||||||    
T  622929 agcgtgagttaactcacgtaggtgtatttttcaacgtgagttaactcacgtaggacgggaatgagcaaaaacaaatgggagaagagcaa 622841  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 242
Target Start/End: Complemental strand, 622961 - 622913
Alignment:
Q  194 gagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 242  Q
    |||| ||||||||||| |||||||| ||||||| |||||||||| ||||    
T  622961 gagcctgagttaactcgcgcatgtgtattttcagcgtgagttaactcac 622913  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 14210649 - 14210701
Alignment:
Q  192 tcgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacat 244  Q
    ||||| ||||||||||  |||||  ||||||||||||||||||||| ||||||    
T  14210649 tcgagtgtgagttaacaaacgcagatgcattttcaacgtgagttaactcacat 14210701  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 181
Target Start/End: Complemental strand, 3557261 - 3557227
Alignment:
Q  147 aattgctcttctcccatttagaattgctcgttcct 181  Q
    ||||||||||||||||||||||||||||| |||||    
T  3557261 aattgctcttctcccatttagaattgctcattcct 3557227  T

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