View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19915_high_3 (Length: 687)

Name: NF19915_high_3
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19915_high_3
NF19915_high_3
[»] chr3 (9 HSPs)
chr3 (8-388)||(54734254-54734641)
chr3 (613-670)||(28154069-28154126)
chr3 (613-670)||(28188887-28188944)
chr3 (409-483)||(3540235-3540309)
chr3 (410-462)||(54528979-54529031)
chr3 (413-483)||(52311849-52311919)
chr3 (410-456)||(33450063-33450109)
chr3 (410-462)||(30533901-30533953)
chr3 (410-454)||(40517554-40517598)
[»] chr2 (4 HSPs)
chr2 (409-483)||(9539080-9539154)
chr2 (410-479)||(25389856-25389925)
chr2 (410-456)||(5037302-5037348)
chr2 (410-454)||(12965052-12965096)
[»] chr1 (8 HSPs)
chr1 (413-466)||(37260932-37260985)
chr1 (413-462)||(20447029-20447078)
chr1 (413-462)||(20532792-20532841)
chr1 (410-462)||(5119054-5119106)
chr1 (410-466)||(5602947-5603003)
chr1 (411-455)||(35392134-35392178)
chr1 (435-483)||(35577526-35577574)
chr1 (410-466)||(39650199-39650255)
[»] chr6 (3 HSPs)
chr6 (410-462)||(806548-806600)
chr6 (409-455)||(7203435-7203481)
chr6 (410-469)||(6819607-6819666)
[»] chr5 (6 HSPs)
chr5 (410-455)||(3758925-3758970)
chr5 (409-469)||(16879203-16879263)
chr5 (410-481)||(40266592-40266664)
chr5 (410-481)||(25787845-25787916)
chr5 (410-480)||(3458017-3458087)
chr5 (410-466)||(40008715-40008771)
[»] scaffold0163 (1 HSPs)
scaffold0163 (410-466)||(35779-35835)
[»] scaffold0037 (1 HSPs)
scaffold0037 (410-466)||(38317-38373)
[»] chr7 (8 HSPs)
chr7 (413-476)||(25428737-25428800)
chr7 (411-456)||(23344444-23344489)
chr7 (413-481)||(23345050-23345118)
chr7 (410-454)||(26009372-26009416)
chr7 (410-456)||(36325622-36325668)
chr7 (410-454)||(19931491-19931535)
chr7 (410-454)||(26011984-26012028)
chr7 (410-454)||(28138762-28138806)
[»] chr4 (5 HSPs)
chr4 (410-480)||(28798150-28798220)
chr4 (410-466)||(33164524-33164580)
chr4 (410-466)||(36217873-36217929)
chr4 (410-462)||(38676942-38676994)
chr4 (410-466)||(40450934-40450990)
[»] chr8 (2 HSPs)
chr8 (410-462)||(35841400-35841452)
chr8 (410-455)||(14087874-14087919)


Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 388
Target Start/End: Complemental strand, 54734641 - 54734254
Alignment:
Q  8 cgaagaatataggatttggatgcaaagaaaaggaaggttttggagcacaccactgaaatatcttagcaggtttggagttgtggcagccagcttatgcaga 107  Q
    |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54734641 cgaaaaatgtaggatttggacgcaaagaaaaggaaggttttggagcacaccactgaaatatcttagcaggtttggagttgtggcagccagcttatgcaga 54734542  T
Q  108 gttggaaacaagcacagatcatgcaaaacttgactggcaataagcaaaccagtcttgtgcggtctcgtctttgcaattgcaattcttctgaataacaaat 207  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54734541 gttggaaacaagcacagatcatgcaaaactagactgccaataagcaaaccagtcttgtgcggtctcgtctttgcaattgcaattcttctgaataacaaat 54734442  T
Q  208 tatcattaatgaaaaagatagttcaaaatcttttannnnnnnnaaggaagttaaaaatcttttatttcctttaaatattattg----tatagataatag- 302  Q
    ||||||||||||||||||||||||||||||||||         ||||||||  ||||||||||||||||||||||||||||||    ||||||||||||     
T  54734441 tatcattaatgaaaaagatagttcaaaatctttt--tttttttaaggaagtccaaaatcttttatttcctttaaatattattgtatatatagataataga 54734344  T
Q  303 -atacatgaacttgcaggggtgtgttaggaaaaagtagagtgctaaatgctaatatgaactcccaac---aagtaatgggccgtgaagct 388  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||    
T  54734343 tatacatgaacttgcaggggtgtgttaggaaaaagtagagtgctaaatgctaatatgaactcccaacaaaaagtaatgggccgtgaagct 54734254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 613 - 670
Target Start/End: Complemental strand, 28154126 - 28154069
Alignment:
Q  613 aataactgctctatgcttcttcacactttgcttttcatatgaatttggaatccaacct 670  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||| |||||    
T  28154126 aataactggtttatgcttcttcacactttgcttttcatatgaatttggaatctaacct 28154069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 613 - 670
Target Start/End: Complemental strand, 28188944 - 28188887
Alignment:
Q  613 aataactgctctatgcttcttcacactttgcttttcatatgaatttggaatccaacct 670  Q
    |||||||| | |||||||||| |||||||||||||||||||||||||||||| |||||    
T  28188944 aataactggtttatgcttcttaacactttgcttttcatatgaatttggaatctaacct 28188887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 409 - 483
Target Start/End: Complemental strand, 3540309 - 3540235
Alignment:
Q  409 tttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatgcataagttaacttg 483  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||||||| | | ||| | ||| ||||||||||||    
T  3540309 tttctgctctttaccaaaactgttttgctcgttcccaaagtaaatgtccatattgctcttgcgtaagttaacttg 3540235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 410 - 462
Target Start/End: Complemental strand, 54529031 - 54528979
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaat 462  Q
    |||||||||||||||||| | |||||||||||||||| ||||||||| |||||    
T  54529031 ttctgctctttaccaaaatgattttgctcattctcaatgtaaatgtccaaaat 54528979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 413 - 483
Target Start/End: Complemental strand, 52311919 - 52311849
Alignment:
Q  413 tgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatgcataagttaacttg 483  Q
    |||||||||||||||  ||||||||| ||| ||||||||||||| | | ||||| ||| ||||||||||||    
T  52311919 tgctctttaccaaaattgttttgctcgttcccaaagtaaatgtctatattgcccctgcgtaagttaacttg 52311849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 410 - 456
Target Start/End: Complemental strand, 33450109 - 33450063
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtc 456  Q
    |||||||| ||||| |||| |||||||||||||||||| ||||||||    
T  33450109 ttctgctcattacccaaactgttttgctcattctcaaaataaatgtc 33450063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 410 - 462
Target Start/End: Complemental strand, 30533953 - 30533901
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaat 462  Q
    |||||||||||||   |||||||||||||||| ||||||||||| || |||||    
T  30533953 ttctgctctttactcgaacggttttgctcattttcaaagtaaatatccaaaat 30533901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 410 - 454
Target Start/End: Complemental strand, 40517598 - 40517554
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatg 454  Q
    |||||||||||||| ||||||||| ||||||||  ||||||||||    
T  40517598 ttctgctctttacccaaacggtttcgctcattcctaaagtaaatg 40517554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 409 - 483
Target Start/End: Complemental strand, 9539154 - 9539080
Alignment:
Q  409 tttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatgcataagttaacttg 483  Q
    ||||||||||||||||||||  |||||||||||| ||||||||||||  | | ||||| ||||||||||||||||    
T  9539154 tttctgctctttaccaaaactattttgctcattcccaaagtaaatgttcatattgcccctgcataagttaacttg 9539080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 410 - 479
Target Start/End: Complemental strand, 25389925 - 25389856
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatgcataagttaa 479  Q
    |||||||||||||  ||| || ||||||||||||||||||||||| | ||||||||| ||| | ||||||    
T  25389925 ttctgctctttactcaaatggatttgctcattctcaaagtaaatgaccaaaatgcccttgcgtgagttaa 25389856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 410 - 456
Target Start/End: Original strand, 5037302 - 5037348
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtc 456  Q
    |||||||||||||||||||||||||| || ||  |||||||||||||    
T  5037302 ttctgctctttaccaaaacggttttgttcgtttccaaagtaaatgtc 5037348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 410 - 454
Target Start/End: Original strand, 12965052 - 12965096
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatg 454  Q
    |||||||||||||| ||||| || |||||||| ||||||||||||    
T  12965052 ttctgctctttacccaaacgtttctgctcattttcaaagtaaatg 12965096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 413 - 466
Target Start/End: Complemental strand, 37260985 - 37260932
Alignment:
Q  413 tgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgccc 466  Q
    ||||||||||| |||||||||||| ||||||||||||||||||| |||||||||    
T  37260985 tgctctttacccaaacggttttgcccattctcaaagtaaatgtccaaaatgccc 37260932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 20447029 - 20447078
Alignment:
Q  413 tgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaat 462  Q
    |||| |||||| |||| ||||||||||||||||||||||||||| |||||    
T  20447029 tgctttttacccaaactgttttgctcattctcaaagtaaatgtccaaaat 20447078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 413 - 462
Target Start/End: Original strand, 20532792 - 20532841
Alignment:
Q  413 tgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaat 462  Q
    |||| |||||| |||| ||||||||||||||||||||||||||| |||||    
T  20532792 tgctttttacccaaactgttttgctcattctcaaagtaaatgtccaaaat 20532841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 410 - 462
Target Start/End: Complemental strand, 5119106 - 5119054
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaat 462  Q
    |||||||||||| | ||||||||||||||||||  |||||||||||| |||||    
T  5119106 ttctgctctttatccaaacggttttgctcattcctaaagtaaatgtctaaaat 5119054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 410 - 466
Target Start/End: Original strand, 5602947 - 5603003
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgccc 466  Q
    |||||||||||||| ||| || ||||||||||| ||||||||||| | |||||||||    
T  5602947 ttctgctctttacccaaatggatttgctcattcccaaagtaaatgaccaaaatgccc 5603003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 411 - 455
Target Start/End: Complemental strand, 35392178 - 35392134
Alignment:
Q  411 tctgctctttaccaaaacggttttgctcattctcaaagtaaatgt 455  Q
    ||||||||||||| |||  ||||||||||||| ||||||||||||    
T  35392178 tctgctctttacccaaattgttttgctcattcccaaagtaaatgt 35392134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 435 - 483
Target Start/End: Complemental strand, 35577574 - 35577526
Alignment:
Q  435 gctcattctcaaagtaaatgtcgaaaatgcccatgcataagttaacttg 483  Q
    |||||||| ||||||||| ||||||||||||| | |||| |||||||||    
T  35577574 gctcattcccaaagtaaaagtcgaaaatgcccctacatatgttaacttg 35577526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 410 - 466
Target Start/End: Original strand, 39650199 - 39650255
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgccc 466  Q
    |||||||| ||||| ||| ||||| ||||||||  |||||||||||| |||||||||    
T  39650199 ttctgctcattacctaaatggtttcgctcattcctaaagtaaatgtccaaaatgccc 39650255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 410 - 462
Target Start/End: Original strand, 806548 - 806600
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaat 462  Q
    |||||||||||||| |||| ||||||||||||||||||||||||||| |||||    
T  806548 ttctgctctttacccaaacagttttgctcattctcaaagtaaatgtctaaaat 806600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 409 - 455
Target Start/End: Original strand, 7203435 - 7203481
Alignment:
Q  409 tttctgctctttaccaaaacggttttgctcattctcaaagtaaatgt 455  Q
    |||||||||||||||||||| ||||||||| ||| ||||||||||||    
T  7203435 tttctgctctttaccaaaactgttttgctcgttcccaaagtaaatgt 7203481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 469
Target Start/End: Complemental strand, 6819666 - 6819607
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatg 469  Q
    ||||||||||||||||||| ||||||||| ||| |||| |||||||| | | ||||||||    
T  6819666 ttctgctctttaccaaaacagttttgctcgttcccaaaataaatgtccatattgcccatg 6819607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 410 - 455
Target Start/End: Original strand, 3758925 - 3758970
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgt 455  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||||    
T  3758925 ttctgctctttaccaaaacggttttactcattcccaaagtaaatgt 3758970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 409 - 469
Target Start/End: Original strand, 16879203 - 16879263
Alignment:
Q  409 tttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatg 469  Q
    |||||||| |||| | |||| ||||||| ||||||||||||||||||| ||||||| ||||    
T  16879203 tttctgctttttatccaaactgttttgcccattctcaaagtaaatgtccaaaatgctcatg 16879263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 410 - 481
Target Start/End: Complemental strand, 40266664 - 40266592
Alignment:
Q  410 ttctgctcttt-accaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatgcataagttaact 481  Q
    ||||||||||| ||| ||| || ||||||||||| ||||||||||| | ||||||||||||| | ||||||||    
T  40266664 ttctgctcttttacccaaatggatttgctcattcccaaagtaaatgaccaaaatgcccatgcgtgagttaact 40266592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 410 - 481
Target Start/End: Complemental strand, 25787916 - 25787845
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatgcataagttaact 481  Q
    |||||||||||| | |||||||| ||||||||  |||| |||||| | ||||||||| ||||| ||||||||    
T  25787916 ttctgctctttatccaaacggttatgctcatttccaaaataaatgaccaaaatgcccctgcatgagttaact 25787845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 410 - 480
Target Start/End: Original strand, 3458017 - 3458087
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatgcataagttaac 480  Q
    |||||||| ||||| |||| || |||||||||  ||||||||||||| ||||| |||||||| | ||||||    
T  3458017 ttctgctcattaccgaaaccgtattgctcatttccaaagtaaatgtccaaaatacccatgcacatgttaac 3458087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 410 - 466
Target Start/End: Original strand, 40008715 - 40008771
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgccc 466  Q
    |||||||| ||||| ||||  | | |||||||||||||||||||||| |||||||||    
T  40008715 ttctgctcattacctaaacattatcgctcattctcaaagtaaatgtctaaaatgccc 40008771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 410 - 466
Target Start/End: Original strand, 35779 - 35835
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgccc 466  Q
    |||||||||||| | ||||  |||||||||||||||||||||||||| |||||||||    
T  35779 ttctgctctttaaccaaacaattttgctcattctcaaagtaaatgtccaaaatgccc 35835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 410 - 466
Target Start/End: Complemental strand, 38373 - 38317
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgccc 466  Q
    |||||||||||||| |||| |||| |||||||| |||||||| ||||||||||||||    
T  38373 ttctgctctttacccaaactgtttcgctcattcccaaagtaattgtcgaaaatgccc 38317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 413 - 476
Target Start/End: Original strand, 25428737 - 25428800
Alignment:
Q  413 tgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatgcataagt 476  Q
    ||||||||||| |||||||| ||||||||| |||||||||| || ||||||||| ||| |||||    
T  25428737 tgctctttacccaaacggttctgctcattcccaaagtaaatatccaaaatgcccctgcgtaagt 25428800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 411 - 456
Target Start/End: Original strand, 23344444 - 23344489
Alignment:
Q  411 tctgctctttaccaaaacggttttgctcattctcaaagtaaatgtc 456  Q
    ||||||||||||| ||||||||||||||||| | ||||||||||||    
T  23344444 tctgctctttacccaaacggttttgctcatttttaaagtaaatgtc 23344489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 413 - 481
Target Start/End: Complemental strand, 23345118 - 23345050
Alignment:
Q  413 tgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatgcataagttaact 481  Q
    ||||||||||| ||||| |||||||||||| |||| |||||||  | | ||||||||| ||||||||||    
T  23345118 tgctctttacccaaacgattttgctcattcccaaaataaatgttcatattgcccatgcgtaagttaact 23345050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 410 - 454
Target Start/End: Original strand, 26009372 - 26009416
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatg 454  Q
    |||||||||||||| ||||| |||||||||||| |||||||||||    
T  26009372 ttctgctctttacccaaacgattttgctcattcccaaagtaaatg 26009416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 410 - 456
Target Start/End: Original strand, 36325622 - 36325668
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtc 456  Q
    |||||||||||||  |||| ||||||||| |||||||||||||||||    
T  36325622 ttctgctctttactcaaacagttttgctcgttctcaaagtaaatgtc 36325668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 410 - 454
Target Start/End: Original strand, 19931491 - 19931535
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatg 454  Q
    |||||||||||| | ||| |||||||||| |||||||||||||||    
T  19931491 ttctgctctttatctaaatggttttgctcgttctcaaagtaaatg 19931535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 410 - 454
Target Start/End: Complemental strand, 26012028 - 26011984
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatg 454  Q
    |||||||||||||| ||||| ||||  ||||||||||||||||||    
T  26012028 ttctgctctttacccaaacgattttaatcattctcaaagtaaatg 26011984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 410 - 454
Target Start/End: Original strand, 28138762 - 28138806
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatg 454  Q
    |||||||||||||| ||| | |||||||||||| |||||||||||    
T  28138762 ttctgctctttacccaaatgattttgctcattcccaaagtaaatg 28138806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 410 - 480
Target Start/End: Complemental strand, 28798220 - 28798150
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgcccatgcataagttaac 480  Q
    |||||||| ||||| |||| || | |||||||||||||||||||||| ||||||||| |||| | ||||||    
T  28798220 ttctgctcattacccaaacagtatcgctcattctcaaagtaaatgtccaaaatgcccctgcacatgttaac 28798150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 410 - 466
Target Start/End: Complemental strand, 33164580 - 33164524
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgccc 466  Q
    |||||||| ||||| ||| ||||  |||||||||||||||||||||| |||||||||    
T  33164580 ttctgctcattacccaaatggttccgctcattctcaaagtaaatgtccaaaatgccc 33164524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 410 - 466
Target Start/End: Original strand, 36217873 - 36217929
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgccc 466  Q
    |||||||||||||  ||| |||||| ||||||| ||||||||| ||| |||||||||    
T  36217873 ttctgctctttactcaaatggttttactcattcccaaagtaaaagtccaaaatgccc 36217929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 410 - 462
Target Start/End: Original strand, 38676942 - 38676994
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaat 462  Q
    |||| ||||||| | |||||||||||||||||| |||| |||||||| |||||    
T  38676942 ttctcctctttatccaaacggttttgctcattcccaaaataaatgtccaaaat 38676994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 410 - 466
Target Start/End: Original strand, 40450934 - 40450990
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaatgccc 466  Q
    |||||||| ||||| |||| || | |||||||| ||||||||| |||||||||||||    
T  40450934 ttctgctcattacctaaacagtatcgctcattcccaaagtaaaagtcgaaaatgccc 40450990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 410 - 462
Target Start/End: Original strand, 35841400 - 35841452
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgtcgaaaat 462  Q
    ||||||||||||||||||| ||| |||||||| | |||||||||||| |||||    
T  35841400 ttctgctctttaccaaaacagttgtgctcatttttaaagtaaatgtccaaaat 35841452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 455
Target Start/End: Complemental strand, 14087919 - 14087874
Alignment:
Q  410 ttctgctctttaccaaaacggttttgctcattctcaaagtaaatgt 455  Q
    |||||||||||||  |||||||||| |||||||||||| |||||||    
T  14087919 ttctgctctttactcaaacggttttactcattctcaaaataaatgt 14087874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University