View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_high_32 (Length: 318)
Name: NF19915_high_32
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_high_32 |
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Alignment Details
Target: chr3 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 141 - 306
Target Start/End: Original strand, 28692686 - 28692851
Alignment:
| Q |
141 |
ccttcagtatctaagaaagcagtgagggaggtgttgttttgtggaagggggtgagaataggaataagagttttgaagatgagagatgaaagacctaagtt |
240 |
Q |
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| T |
28692686 |
ccttcagtatctaagaaagcagtgagggaggtgttgttttgtggaagggggtgagaataggaataagagttttgaagatgagagatgaaagacctaagtt |
28692785 |
T |
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| Q |
241 |
catgtttgagatagtcatgttgattagggtaaagggtttcaagcatctccaactcttcctttgctt |
306 |
Q |
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| T |
28692786 |
catgtttgagatagtcatgttgattagggtaaagggtttcaagcatctccaactcttcctttgctt |
28692851 |
T |
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Target: chr3; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 18 - 94
Target Start/End: Original strand, 28692564 - 28692640
Alignment:
| Q |
18 |
tttatatgctccaagcttgttgattctgcattacaagaatagaataaaacaacctcaaaaaccatgtttagcagcac |
94 |
Q |
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| T |
28692564 |
tttatatgctccaagcttgttgattctgcattacaagaatagaataaaacaacctcaaaaaccatgtttcgcagcac |
28692640 |
T |
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