View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19915_high_34 (Length: 315)

Name: NF19915_high_34
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19915_high_34
NF19915_high_34
[»] chr1 (1 HSPs)
chr1 (19-310)||(48271221-48271512)


Alignment Details
Target: chr1 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 19 - 310
Target Start/End: Complemental strand, 48271512 - 48271221
Alignment:
Q  19 gtaaattaggatccttcgcaatttcagcaaggtatccatctatgagtttggcaaccatcagcttagaggcatctgataaaatccccggctttcttatccc 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48271512 gtaaattaggatccttcgcaatttcagcaaggtatccatctatgagttttgcaaccatcagcttagaggcatctgataaaatccccggctttcttatccc 48271413  T
Q  119 ttcaagttcgccacctccaaccaattcaatctcggaattgtgatctttcataagaaactcccttacaattttctgtactataccaacatcatacattgta 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48271412 ttcaagttcgccacctccaaccaattcaatctcggaattgtgatctttcataagaaactcccttacaattttctgtactataccaacatcatacattgta 48271313  T
Q  219 atctctccatctggtgctttaatcaaaatatcgtttaccgaagcctcctctagttgctgaccaattctctttactagcacatctctgctcct 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  48271312 atctctccatctggtgctttaatcaaaatatcgtttaccgaagcctcctctagttgctgaccaattctctttactagcacatctctgatcct 48271221  T

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