View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19915_high_38 (Length: 302)

Name: NF19915_high_38
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19915_high_38
NF19915_high_38
[»] chr3 (5 HSPs)
chr3 (151-302)||(7238805-7238957)
chr3 (16-106)||(7239011-7239101)
chr3 (150-242)||(41361354-41361446)
chr3 (144-194)||(7238945-7238995)
chr3 (149-194)||(17647752-17647797)
[»] chr5 (4 HSPs)
chr5 (144-240)||(32303655-32303751)
chr5 (94-125)||(35447085-35447116)
chr5 (155-196)||(8254755-8254796)
chr5 (149-189)||(42923937-42923977)
[»] chr4 (11 HSPs)
chr4 (99-200)||(6083667-6083767)
chr4 (149-189)||(36138985-36139025)
chr4 (149-239)||(42096778-42096869)
chr4 (145-194)||(30211951-30212000)
chr4 (145-194)||(37182235-37182284)
chr4 (149-239)||(36139016-36139107)
chr4 (101-196)||(42096700-42096794)
chr4 (144-189)||(53979061-53979106)
chr4 (151-196)||(55301391-55301436)
chr4 (144-188)||(23806243-23806287)
chr4 (149-189)||(56210958-56210998)
[»] chr2 (2 HSPs)
chr2 (147-239)||(13387367-13387459)
chr2 (147-194)||(44069891-44069938)
[»] chr6 (3 HSPs)
chr6 (149-202)||(2744163-2744216)
chr6 (146-189)||(2146778-2146821)
chr6 (146-194)||(3607022-3607070)
[»] chr8 (4 HSPs)
chr8 (153-242)||(15020034-15020123)
chr8 (149-243)||(5995179-5995274)
chr8 (151-189)||(5995150-5995188)
chr8 (149-194)||(157550-157595)
[»] scaffold0254 (1 HSPs)
scaffold0254 (146-189)||(23239-23282)
[»] chr1 (6 HSPs)
chr1 (146-189)||(10608940-10608983)
chr1 (94-125)||(27664051-27664082)
chr1 (146-196)||(31847696-31847746)
chr1 (147-234)||(622841-622929)
chr1 (146-194)||(622913-622961)
chr1 (144-196)||(14210649-14210701)
[»] chr7 (1 HSPs)
chr7 (99-133)||(3557227-3557261)


Alignment Details
Target: chr3 (Bit Score: 117; Significance: 1e-59; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 151 - 302
Target Start/End: Complemental strand, 7238957 - 7238805
Alignment:
Q  151 tgagttaactcacgcatgtgcatttt-caacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctcaaatgataat 249  Q
    |||||||| ||||| | ||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7238957 tgagttaagtcacgtaggtgcatttttcaacgtgagttaaatcacgttggatgtgaattaacaaaaatggatgggagaagagcaattctcaaatgataat 7238858  T
Q  250 gcttataagataacgctagcatgcgaatattatagtgttaatgttatttataa 302  Q
    |||||||||||||| | ||||||||||||||||||||||||||||||||||||    
T  7238857 gcttataagataacaccagcatgcgaatattatagtgttaatgttatttataa 7238805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 7239101 - 7239011
Alignment:
Q  16 atgaagttccctcatcatccaactctaatggatcacatgtctcccctagtaagtttctacatacataggataaatgataagataattgctc 106  Q
    |||||||||| | | || |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  7239101 atgaagttccattaccacccaactctaatggatcacatgtctcccctagtaagtttctacatacataggaaaaatgataagataattgctc 7239011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 242
Target Start/End: Original strand, 41361354 - 41361446
Alignment:
Q  150 gtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctcaaa 242  Q
    |||| |||||||||  | |||||||||||||| ||||||| |||||| ||| | |||| ||||||||   | |||||||||||||||| ||||    
T  41361354 gtgaattaactcacataggtgcattttcaacgcgagttaactcacataggacgggaatgaacaaaaacaaaagggagaagagcaattcccaaa 41361446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 7238995 - 7238945
Alignment:
Q  144 tcgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 194  Q
    |||||||||| |||||||||| | ||| ||||||||| |||||||||||||    
T  7238995 tcgagcgtgaattaactcacgtaagtgtattttcaacatgagttaagtcac 7238945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 17647752 - 17647797
Alignment:
Q  149 cgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 194  Q
    |||||||||||||||| | ||||||||||||||||| |||| ||||    
T  17647752 cgtgagttaactcacgtaggtgcattttcaacgtgatttaactcac 17647797  T

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Target: chr5 (Bit Score: 57; Significance: 8e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 144 - 240
Target Start/End: Original strand, 32303655 - 32303751
Alignment:
Q  144 tcgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctca 240  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||| |||||| ||| |  ||| | |||||| |||||||||||||||||||||||    
T  32303655 tcgagcgtgagttaactcacgcatgtgtattttcagcgtgagttaactcacataggacggaaatgagcaaaaacggatgggagaagagcaattctca 32303751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 125
Target Start/End: Complemental strand, 35447116 - 35447085
Alignment:
Q  94 aagataattgctcttctcccatttagaattgc 125  Q
    ||||||||||||||||||||||||||||||||    
T  35447116 aagataattgctcttctcccatttagaattgc 35447085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 8254755 - 8254796
Alignment:
Q  155 ttaactcacgcatgtgcattttcaacgtgagttaagtcacat 196  Q
    ||||||||||||||||||||||||  ||||||||| ||||||    
T  8254755 ttaactcacgcatgtgcattttcagtgtgagttaactcacat 8254796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 42923977 - 42923937
Alignment:
Q  149 cgtgagttaactcacgcatgtgcattttcaacgtgagttaa 189  Q
    |||| ||||||||| ||| ||||||||||||||||||||||    
T  42923977 cgtgtgttaactcatgcaggtgcattttcaacgtgagttaa 42923937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 200
Target Start/End: Original strand, 6083667 - 6083767
Alignment:
Q  99 aattgctcttctcccatttagaattgctcgttcctgtnnnnnnnntcgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacattg 198  Q
    |||||||||||||||||||||||||||||||||| ||        || || ||||||||||||||||| ||||||||||  |||||||||| |||| |||    
T  6083667 aattgctcttctcccatttagaattgctcgttcccgt-caaaaagtcaagtgtgagttaactcacgcaggtgcattttcggcgtgagttaactcacgttg 6083765  T
Q  199 ga 200  Q
    ||    
T  6083766 ga 6083767  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 149 - 189
Target Start/End: Original strand, 36138985 - 36139025
Alignment:
Q  149 cgtgagttaactcacgcatgtgcattttcaacgtgagttaa 189  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  36138985 cgtgagttaactcacgcatgtgcattttcaacgtgagttaa 36139025  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 42096778 - 42096869
Alignment:
Q  149 cgtgagttaactcacgcatgtgcatttt-caacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctc 239  Q
    |||||||||||||||  | ||||||||| || |||||||||| |||| ||||||  |||| | ||||||| |||||||||||||||||||||    
T  42096778 cgtgagttaactcacataggtgcatttttcagcgtgagttaactcacgttggataggaatgagcaaaaatagatgggagaagagcaattctc 42096869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Original strand, 30211951 - 30212000
Alignment:
Q  145 cgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 194  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||| ||||    
T  30211951 cgagcatgagttaactcacacatgtgcattttcaacgtgagttaactcac 30212000  T

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Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 37182284 - 37182235
Alignment:
Q  145 cgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 194  Q
    ||||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  37182284 cgagcgtaagttaactcacacatgtgcattttcaacgtgagttaactcac 37182235  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 239
Target Start/End: Original strand, 36139016 - 36139107
Alignment:
Q  149 cgtgagttaactcacgcatgtgcatttt-caacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctc 239  Q
    |||||||||||||| | ||||| ||||| || |||||||||| |||  ||||||| |||| | ||||||   ||||||||||||||||||||    
T  36139016 cgtgagttaactcatgtatgtgaatttttcagcgtgagttaactcatgttggatgagaatgagcaaaaacatatgggagaagagcaattctc 36139107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 196
Target Start/End: Original strand, 42096700 - 42096794
Alignment:
Q  101 ttgctcttctcccatttagaattgctcgttcctgtnnnnnnnntcgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacat 196  Q
    ||||||||||||| |||||||||||||||||  ||        |||| |||||||||||||||| |  | ||||||||||||||||||| ||||||    
T  42096700 ttgctcttctcccgtttagaattgctcgttctcgtagaaaag-tcgaacgtgagttaactcacgtagatacattttcaacgtgagttaactcacat 42096794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 189
Target Start/End: Original strand, 53979061 - 53979106
Alignment:
Q  144 tcgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaa 189  Q
    |||| ||||||||||||||| |||||| ||||||| ||||||||||    
T  53979061 tcgaacgtgagttaactcacacatgtgtattttcagcgtgagttaa 53979106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 55301391 - 55301436
Alignment:
Q  151 tgagttaactcacgcatgtgcattttcaacgtgagttaagtcacat 196  Q
    ||||||| ||||||||||| ||||||||||||||||| | ||||||    
T  55301391 tgagttagctcacgcatgtacattttcaacgtgagttgactcacat 55301436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 23806243 - 23806287
Alignment:
Q  144 tcgagcgtgagttaactcacgcatgtgcattttcaacgtgagtta 188  Q
    |||| |||||||||||||||| | ||| |||||||||||||||||    
T  23806243 tcgaacgtgagttaactcacgtaggtgtattttcaacgtgagtta 23806287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 56210998 - 56210958
Alignment:
Q  149 cgtgagttaactcacgcatgtgcattttcaacgtgagttaa 189  Q
    ||||||||||||||| | |||| ||||||||||||||||||    
T  56210998 cgtgagttaactcacacgtgtgtattttcaacgtgagttaa 56210958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 147 - 239
Target Start/End: Original strand, 13387367 - 13387459
Alignment:
Q  147 agcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctc 239  Q
    |||||||||||||||||| ||||| ||||||| | |||||||| |||| | ||| | |||| ||||||||| |||| ||||||| ||||||||    
T  13387367 agcgtgagttaactcacgtatgtgtattttcatcatgagttaactcacgtaggacgagaatgaacaaaaatagatgagagaagaacaattctc 13387459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 147 - 194
Target Start/End: Original strand, 44069891 - 44069938
Alignment:
Q  147 agcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 194  Q
    |||||||||||||||||||| ||| |||||||||||||||||| ||||    
T  44069891 agcgtgagttaactcacgcaggtgtattttcaacgtgagttaactcac 44069938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 202
Target Start/End: Original strand, 2744163 - 2744216
Alignment:
Q  149 cgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacattggatg 202  Q
    |||||||||||||||||||||||||||| |||||||||||| |||  |||||||    
T  2744163 cgtgagttaactcacgcatgtgcatttttaacgtgagttaactcatgttggatg 2744216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 189
Target Start/End: Original strand, 2146778 - 2146821
Alignment:
Q  146 gagcgtgagttaactcacgcatgtgcattttcaacgtgagttaa 189  Q
    |||||||||| |||||||||||||| | ||||||||||||||||    
T  2146778 gagcgtgagtgaactcacgcatgtgtaatttcaacgtgagttaa 2146821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 3607070 - 3607022
Alignment:
Q  146 gagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 194  Q
    |||||||| || ||||||||||||| ||||| |||||||||||| ||||    
T  3607070 gagcgtgaattgactcacgcatgtgtatttttaacgtgagttaactcac 3607022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 242
Target Start/End: Complemental strand, 15020123 - 15020034
Alignment:
Q  153 agttaactcacgcatgtgcattttcaacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctcaaa 242  Q
    |||||||| ||||| ||| ||||||||||||| |||| |||  |||||| | ||| | ||||||  ||| ||||||||||||||||||||    
T  15020123 agttaacttacgcaggtgtattttcaacgtgaattaactcatgttggatataaatgagcaaaaacagataggagaagagcaattctcaaa 15020034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 5995179 - 5995274
Alignment:
Q  149 cgtgagttaactcacgcatgtgcatttt-caacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaattctcaaat 243  Q
    ||||||||||||| |  ||||| ||||| || |||||||||| |||| ||| |  ||||| | ||||||  |||||||||||||||||||||||||    
T  5995179 cgtgagttaactcgcatatgtgtatttttcagcgtgagttaactcacgttgaacatgaatgagcaaaaaaagatgggagaagagcaattctcaaat 5995274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 189
Target Start/End: Original strand, 5995150 - 5995188
Alignment:
Q  151 tgagttaactcacgcatgtgcattttcaacgtgagttaa 189  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  5995150 tgagttaactcacgcatgtgtattttcgacgtgagttaa 5995188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 157595 - 157550
Alignment:
Q  149 cgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 194  Q
    ||||| |||||||||||||||||||||||||  |||||||| ||||    
T  157595 cgtgaattaactcacgcatgtgcattttcaatatgagttaattcac 157550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0254 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0254
Description:

Target: scaffold0254; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 189
Target Start/End: Original strand, 23239 - 23282
Alignment:
Q  146 gagcgtgagttaactcacgcatgtgcattttcaacgtgagttaa 189  Q
    |||||||||| |||||||||||||| | ||||||||||||||||    
T  23239 gagcgtgagtgaactcacgcatgtgtaatttcaacgtgagttaa 23282  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 10608983 - 10608940
Alignment:
Q  146 gagcgtgagttaactcacgcatgtgcattttcaacgtgagttaa 189  Q
    |||||||||||||||||||||| |||||||| ||||||| ||||    
T  10608983 gagcgtgagttaactcacgcatatgcatttttaacgtgaattaa 10608940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 94 - 125
Target Start/End: Complemental strand, 27664082 - 27664051
Alignment:
Q  94 aagataattgctcttctcccatttagaattgc 125  Q
    ||||||||||||||||||||||||||||||||    
T  27664082 aagataattgctcttctcccatttagaattgc 27664051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 31847746 - 31847696
Alignment:
Q  146 gagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacat 196  Q
    |||| |||||||||||||||| ||||||||| | |||||||||| ||||||    
T  31847746 gagcatgagttaactcacgcaagtgcatttttaccgtgagttaactcacat 31847696  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 147 - 234
Target Start/End: Complemental strand, 622929 - 622841
Alignment:
Q  147 agcgtgagttaactcacgcatgtgcatttt-caacgtgagttaagtcacattggatgtgaattaacaaaaatggatgggagaagagcaa 234  Q
    |||||||||||||||||| | ||| ||||| ||||||||||||| |||| | ||| | |||| | ||||||   |||||||||||||||    
T  622929 agcgtgagttaactcacgtaggtgtatttttcaacgtgagttaactcacgtaggacgggaatgagcaaaaacaaatgggagaagagcaa 622841  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 194
Target Start/End: Complemental strand, 622961 - 622913
Alignment:
Q  146 gagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcac 194  Q
    |||| ||||||||||| |||||||| ||||||| |||||||||| ||||    
T  622961 gagcctgagttaactcgcgcatgtgtattttcagcgtgagttaactcac 622913  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 14210649 - 14210701
Alignment:
Q  144 tcgagcgtgagttaactcacgcatgtgcattttcaacgtgagttaagtcacat 196  Q
    ||||| ||||||||||  |||||  ||||||||||||||||||||| ||||||    
T  14210649 tcgagtgtgagttaacaaacgcagatgcattttcaacgtgagttaactcacat 14210701  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 133
Target Start/End: Complemental strand, 3557261 - 3557227
Alignment:
Q  99 aattgctcttctcccatttagaattgctcgttcct 133  Q
    ||||||||||||||||||||||||||||| |||||    
T  3557261 aattgctcttctcccatttagaattgctcattcct 3557227  T

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