View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19915_high_43 (Length: 290)
Name: NF19915_high_43
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_high_43 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 272
Target Start/End: Complemental strand, 7238820 - 7238561
Alignment:
| Q |
1 |
ttaatgttatttataatgtggttgatttgtctctttttattgtaggtaatgaaaattcagagtccaattcagatcaagagtgagagggtggtggtgataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
7238820 |
ttaatgttatttataatgtggttgatttgtctctttttat-gtaggtaatgaaaattcagagtccaattcagatcaagagtgagagggtggtg---ataa |
7238725 |
T |
|
| Q |
101 |
cataataaaccccaacatttaagtttgnnnnnnngcttaatttgtaataagaagtgtgggtcagtacttggttttaattagacccaaacactacagtagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7238724 |
cataataaaccccaacatttaagtttgtttttttgcttatt--------acaagtgtgggtcagtacttggttttaattagacccaaacactacagtagt |
7238633 |
T |
|
| Q |
201 |
ttatttttgtgaagcatgtgatgctcatgggtttcaactttaatcttgaaggcatatttatatttcacatgt |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7238632 |
ttatttttgtgaagcatgtgatgctcatgggtttcaactttaatcttgaaggcatatttatatttcacatgt |
7238561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University