View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_high_45 (Length: 284)
Name: NF19915_high_45
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_high_45 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 48532161 - 48532330
Alignment:
| Q |
5 |
atttcatgtggtttttgctgagtcatctctgtcctaactcactcagcgtgcgccacatcaccgccacctatgtaatcatatgcgacatcagtaatcaaat |
104 |
Q |
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| T |
48532161 |
atttcatgtggtttttgctgagtcatccctgtcctaatccactcagcgtacgccacatcactgccacctatgtaatcctatgccacatcagtaatcaaat |
48532260 |
T |
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| Q |
105 |
gagtttataatcaaaactcaaatgatta-taattgtgggaaggttttggaaggattaataagtacatgaa |
173 |
Q |
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| T |
48532261 |
gagtttataatcaaaacgtaaatgattagtaattgcatggaggttttgaaaggattagtaaatatatgaa |
48532330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 176 - 265
Target Start/End: Original strand, 48535795 - 48535884
Alignment:
| Q |
176 |
aaaattcaaattagctctatttacaaggattatatacatatttaagccgagatccaaaccaagaccgagattcttgtcacaagagaagga |
265 |
Q |
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| T |
48535795 |
aaaattcagattagctctatttgcaagtactatatacatatttaagccgagatccaaaccaagacccacattcttgtcacaagagaagga |
48535884 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 223
Target Start/End: Complemental strand, 4140178 - 4140091
Alignment:
| Q |
134 |
aattgtgggaaggttttggaaggattaataagtacatgaattaaaattcaaattagctctatttacaaggattatatacatatttaagcc |
223 |
Q |
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| T |
4140178 |
aattgtaggaaaattttggaaggattagtaagtacat--attaaaattcaaaaaagctctattcacaaagactatagacatatttaagcc |
4140091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 17640138 - 17640203
Alignment:
| Q |
67 |
gccacctatgtaatcatatgcgacatcagtaatcaaatgagtttataatcaaaactcaaatgatta |
132 |
Q |
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| T |
17640138 |
gccacatatctaattacatgccacatcaggaatcaaatgtgtttaagatcaaaactcaaatgatta |
17640203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 35769726 - 35769785
Alignment:
| Q |
73 |
tatgtaatcatatgcgacatcagtaatcaaatgagtttataatcaaaactcaaatgatta |
132 |
Q |
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| T |
35769726 |
tatgtaatcatatgtcacgtctataatcaaatgagtttagaatcataactcaaatgatta |
35769785 |
T |
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