View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_high_5 (Length: 584)
Name: NF19915_high_5
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 82 - 569
Target Start/End: Original strand, 38052025 - 38052512
Alignment:
| Q |
82 |
tgtcaagagcacaagattcaattctcaaatacatgatgaagattatgacaatatgcaaagctcaaggttttgtctatggtattgttccagagaaaggaaa |
181 |
Q |
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| T |
38052025 |
tgtcaagagcacaagattcaattctcaaatacatgatgaagattatgacaatatgcaaagctcaaggttttgtctatggtattgttccagagaaaggaaa |
38052124 |
T |
|
| Q |
182 |
accagtaacaggttcttcagaaagcttgcgtgaatggtggaaagaacaagttaaattcagtcaaaatgcaccagctgcagtttccaaatacttaccatca |
281 |
Q |
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| T |
38052125 |
accagtaacaggttcttcagaaagcttgcgtgaatggtggaaagaacaagttaaattcagtcaaaatgcaccagctgcagtttccaaatacttaccatca |
38052224 |
T |
|
| Q |
282 |
tcactcttagaaaatcaacaagagttagaattattagatcccatttcatcatatatgcatttactttatgacttgcaagatactactttaggttctcttc |
381 |
Q |
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| T |
38052225 |
tcactcttagaaaatcaacaagagttagaattattagatcccatttcatcatatatgcatttactttatgacttgcaagatactactttaggttctcttc |
38052324 |
T |
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| Q |
382 |
tttcagctctaatgcaacactgtgtgccaccacaaagaagattccctcttgaaataggtttggctcctccatggtggcctaatggaacagaacagtggtg |
481 |
Q |
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| T |
38052325 |
tttcagctctaatgcaacactgtgtaccaccacaaagaagattccctcttgaaataggtttggctcctccatggtggcctaatggaacagaacagtggtg |
38052424 |
T |
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| Q |
482 |
gggtcaacaaggtggtttgtcagaacaacatggcccaccaccttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgtg |
569 |
Q |
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| T |
38052425 |
gggtcaacaaggtggtttgtcagaacaacatggcccaccaccttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgtg |
38052512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 372 - 568
Target Start/End: Original strand, 39679769 - 39679965
Alignment:
| Q |
372 |
ggttctcttctttcagctctaatgcaacactgtgtgccaccacaaagaagattccctcttgaaataggtttggctcctccatggtggcctaatggaacag |
471 |
Q |
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| T |
39679769 |
ggttcgcttctttctgctttaatgcaacattgtgtgccaccacagaggaggtttccactcgagaggggaatttctcctccctggtggcccacaggatcag |
39679868 |
T |
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| Q |
472 |
aacagtggtggggtcaacaaggtggtttgtcagaacaacatggcccaccaccttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgt |
568 |
Q |
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| T |
39679869 |
aaaattggtggggtgaacaaggtttgttggcccaagaacaaggcccaccaccttataagaaaccacatgaccttaaaaaggcatggaaagtttctgt |
39679965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 523 - 569
Target Start/End: Original strand, 41239896 - 41239942
Alignment:
| Q |
523 |
cttataaaaaacctcatgatttgaaaaaggcttggaaagtttctgtg |
569 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
41239896 |
cttataaaagaccttatgatttgaaaaaggcttggaaagtttctgtg |
41239942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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