View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_high_56 (Length: 228)
Name: NF19915_high_56
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_high_56 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 51 - 214
Target Start/End: Complemental strand, 7414415 - 7414252
Alignment:
| Q |
51 |
ttaaaagtccaacttcaacaaatcacagtgaaatgggcattgaaacgcgagaatcttagtttcaacgtgaaacaaacatgccataagtgtcataaaataa |
150 |
Q |
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| T |
7414415 |
ttaaaagtccaacttcaacaaatcacggtgaaatgggcattgaaacgagagaatcttagtttcaacgtgaaacaaacatgccataagtgtcataaaataa |
7414316 |
T |
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| Q |
151 |
tcaattaggaataaatttaaagctaaaataatgtcacatcttgttccttttatgggttacatgt |
214 |
Q |
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| T |
7414315 |
tcaattaggaataaatttaaagctaaaataatgtcacatcttgttccttttatgggttacatgt |
7414252 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 32 - 137
Target Start/End: Complemental strand, 15907303 - 15907198
Alignment:
| Q |
32 |
cgcacgtttaatgaaaagtttaaaagtccaacttcaacaaatcacagtgaaatgggcattgaaacgcgagaatcttagtttcaacgtgaaacaaacatgc |
131 |
Q |
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| T |
15907303 |
cgcatgtttagtgaaaagcttgaatatccagcttcagcaaatcatggtaaaatggacattggaacgcaagaatctttgtttcaacgcgaaccaaacatgc |
15907204 |
T |
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| Q |
132 |
cataag |
137 |
Q |
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|||||| |
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| T |
15907203 |
cataag |
15907198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Complemental strand, 40344238 - 40344170
Alignment:
| Q |
38 |
tttaatgaaaagtttaaaagtccaacttcaacaaatcacagtgaaatgggcattgaaacgcgagaatct |
106 |
Q |
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| T |
40344238 |
tttagtgaaaagtttgaatgtccaacttcagcaaatcactgttaaatgggcattgggactcgagaatct |
40344170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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