View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_high_6 (Length: 555)
Name: NF19915_high_6
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 16 - 542
Target Start/End: Complemental strand, 39877663 - 39877138
Alignment:
| Q |
16 |
aaaaacatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatgaatatgttcctttatcagcaaggttgtctaagaagggataccat |
115 |
Q |
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| T |
39877663 |
aaaaacatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatgatgatgttcctttatcagcaaggttgtctaagaagggataccat |
39877564 |
T |
|
| Q |
116 |
cattaacaaactccagattgtcaggcctttgttttttgggatttggttcatcctttagcctatgtgtatgaatgaatggatctctctttgataacacctc |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39877563 |
cattaacaaactccagattgtcaggcctttgttttttgggatttggttcatcctttagcctatgtgtatgaatgaatggatctctctttgataacacctc |
39877464 |
T |
|
| Q |
216 |
ttaatatcctacaggtgtggatttgaagtgaggatacttcctaaaaaattagaatgactcaagaagcatttagtaacacaagagatggtgtctggaatct |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39877463 |
ttaatatcctacaggtgtggatttgaagtgaggatacttcct--aaaattagaatgactcaagaagcatttagtaacacaagagatggtgtctggaatct |
39877366 |
T |
|
| Q |
316 |
ccagaatgaacagacaaaagaaagaacagctgttgccttcttaagagttgacgatgaacacatgaaggtgtttgagaatcgtgtgagacagattcttatg |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39877365 |
ccagaatgaacagacaaaagaaagaacagctgttgccttcttaagagttgacgatgaacacatgaaggtgtttgagaatcgtgtgagacagattcttatg |
39877266 |
T |
|
| Q |
416 |
tcttcgtgttctaatacattcacaaaaattgtcaataagtggaatacagctttaataggtaatggaagttgagttttagga-nnnnnnnngcagagattt |
514 |
Q |
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| T |
39877265 |
tcttcgtgttctaatacattcacaaaaattgtcaataagtggaatacagctttaataggtaatggaagttgagttttaggatttttttttgcagagattt |
39877166 |
T |
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| Q |
515 |
ttgtcaatttttcccctgactctggttc |
542 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
39877165 |
ttgtcaatttttcccctgactctggttc |
39877138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 110 - 542
Target Start/End: Complemental strand, 44780797 - 44780373
Alignment:
| Q |
110 |
taccatcattaacaaactccagattgtcaggcctttgttttttgggatttggttcatcctttagcctatgtgtatgaatgaatggatctctctttgataa |
209 |
Q |
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||||||||||||||| ||||||||| |||| |||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44780797 |
taccatcattaacaa-ctccagattatcagtcctttgtttttttgg-----gttcatcctttaacctatgtgtatgaatgaatggatctctctttgataa |
44780704 |
T |
|
| Q |
210 |
cacctcttaatatcctacaggtgtggatttgaagtgaggatacttcctaaaaaattagaatgactcaagaagcatttagtaacacaagagatggtgtctg |
309 |
Q |
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| T |
44780703 |
cacctcttaatatcctacaggtgtggatttgaagtgaggatacttcc--aaaaattagaatgactcaagaagcattcagtaacacaagagatggtgtctg |
44780606 |
T |
|
| Q |
310 |
gaatctccagaatgaacagacaaaagaaagaacagctgttgccttcttaagagttgacgatgaacacatgaaggtgtttgagaatcgtgtgagacagatt |
409 |
Q |
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| T |
44780605 |
gaatctccagaatgaacagacaaaagaaagaacagctgttgccttcttaagagttgacgatgaacacatgaaggtgtttgagaatcgtgtgagacagatt |
44780506 |
T |
|
| Q |
410 |
cttatgtcttcgtgttctaatacattcacaaaaattgtcaataagtggaatacagctttaataggtaatggaagttgagttttaggannnnnnnngcaga |
509 |
Q |
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| T |
44780505 |
cttatgtcttcgggttctactacattcacaaaaattgtcaataagtggaatacagctttaataggtaatggaatttgagttctaggagtttttttgcaga |
44780406 |
T |
|
| Q |
510 |
gatttttgtcaatttttcccctgactctggttc |
542 |
Q |
| |
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| ||||||||||||||| |||||||| |||||| |
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| T |
44780405 |
ggtttttgtcaattttttccctgactttggttc |
44780373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 39488435 - 39488380
Alignment:
| Q |
16 |
aaaaacatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatg |
71 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39488435 |
aaaaacatcgcattcagcttctcgtgaagactatgaatctgaagatgatgatgatg |
39488380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 39416755 - 39416668
Alignment:
| Q |
16 |
aaaaacatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatgaatatgttcctttatcagcaaggttgtctaagaag |
106 |
Q |
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||||||||||||||||| ||| |||||||||| ||||||||| ||||||||||||| |||||||||| ||||||||||| |||||||| |
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| T |
39416755 |
aaaaacatcgcattcagcttcacgtgaagactttgaatctgatgatgatgatgatg---atgttcctttgtcagcaaggtttgctaagaag |
39416668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 16 - 71
Target Start/End: Complemental strand, 39422908 - 39422853
Alignment:
| Q |
16 |
aaaaacatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatg |
71 |
Q |
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|||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
39422908 |
aaaaacatcgcattcagattcttgtaaagactatgaatctgaagatgatgatgatg |
39422853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 39151521 - 39151598
Alignment:
| Q |
16 |
aaaaacatcgcattcagattctcgtgaagactatgaatctgaagatgatgatgatgaatatgttcctttatcagcaaggtt |
96 |
Q |
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| T |
39151521 |
aaaaacatctcattcagcttctcgcgaagactttgaatctgaagatgaagatgatg---atgttcctttgtcagcaaggtt |
39151598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 8e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 230 - 474
Target Start/End: Original strand, 2898520 - 2898762
Alignment:
| Q |
230 |
gtgtggatttgaagtgaggatacttcctaaaaaattagaatgactcaagaagcatttagtaacacaagagatggtgtctggaatctccagaatgaacaga |
329 |
Q |
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|||||||||||||||| ||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | |
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| T |
2898520 |
gtgtggatttgaagtgcggatacttcctaaaa--ttagaacgactcaagaagcattcggtaacacaagagatggtgtttggaatctccagaatgaacaaa |
2898617 |
T |
|
| Q |
330 |
caaaagaaagaacagctgttgccttcttaagagttgacgatgaacacatgaaggtgtttgagaatcgtgtgagacagattcttatgtcttcgtgttctaa |
429 |
Q |
| |
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| |||||||| |||||| ||| |||||||||||||| |||||||| || || ||||||||||||||||||| |||||||||||||||||| |||||| |
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| T |
2898618 |
ccaaagaaaggacagctactgctttcttaagagttgatgatgaacagattaaaatgtttgagaatcgtgtgaggcagattcttatgtcttcgggttctac |
2898717 |
T |
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| Q |
430 |
tacattcacaaaaattgtcaataagtggaatacagctttaatagg |
474 |
Q |
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| T |
2898718 |
tacattcacaaaaattgtcaataagtggaatacagctttaatagg |
2898762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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