View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19915_high_9 (Length: 525)

Name: NF19915_high_9
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19915_high_9
NF19915_high_9
[»] chr5 (6 HSPs)
chr5 (251-501)||(39011655-39011895)
chr5 (17-149)||(39011996-39012129)
chr5 (253-349)||(3938151-3938242)
chr5 (282-313)||(15974341-15974372)
chr5 (256-339)||(29022598-29022676)
chr5 (266-303)||(19338608-19338645)
[»] chr2 (5 HSPs)
chr2 (266-356)||(15803150-15803236)
chr2 (56-150)||(15803337-15803434)
chr2 (256-340)||(31584789-31584868)
chr2 (278-349)||(30072107-30072173)
chr2 (278-356)||(44954042-44954115)
[»] chr8 (5 HSPs)
chr8 (257-358)||(1839844-1839941)
chr8 (257-310)||(43733144-43733197)
chr8 (262-315)||(12506225-12506278)
chr8 (266-310)||(2474799-2474843)
chr8 (253-297)||(10589821-10589865)
[»] chr4 (5 HSPs)
chr4 (253-357)||(42650597-42650697)
chr4 (260-344)||(4442006-4442086)
chr4 (279-339)||(46669991-46670047)
chr4 (262-308)||(45971566-45971612)
chr4 (278-356)||(52430600-52430674)
[»] chr7 (5 HSPs)
chr7 (268-339)||(30301959-30302025)
chr7 (266-316)||(43741703-43741753)
chr7 (278-353)||(31180012-31180081)
chr7 (278-356)||(1277900-1277974)
chr7 (266-355)||(23772572-23772657)
[»] chr6 (2 HSPs)
chr6 (278-356)||(4089442-4089515)
chr6 (279-340)||(33184172-33184232)
[»] chr3 (3 HSPs)
chr3 (262-315)||(45570972-45571025)
chr3 (253-353)||(53888452-53888548)
chr3 (88-150)||(40674272-40674336)
[»] chr1 (8 HSPs)
chr1 (51-150)||(25561133-25561234)
chr1 (56-150)||(49102794-49102891)
chr1 (278-356)||(49102997-49103071)
chr1 (59-150)||(6538152-6538245)
chr1 (257-316)||(37649640-37649699)
chr1 (278-317)||(43036358-43036397)
chr1 (257-352)||(17556633-17556724)
chr1 (278-356)||(35619549-35619623)


Alignment Details
Target: chr5 (Bit Score: 142; Significance: 3e-74; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 251 - 501
Target Start/End: Complemental strand, 39011895 - 39011655
Alignment:
Q  251 cttcccaaactcccaaaaatcctccatcaatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataagtcctccaaag 350  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  39011895 cttcccaaactcccaaaaaccctccatcaatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataagccccccaaag 39011796  T
Q  351 cccctcttttcccctcttttcaatgttatctatttcttccacttatttcnnnnnnncaagactttccttccctttctctcaaaactcgcaaaaacttaag 450  Q
    |||||          |||| ||||||||||||||||||||||||| |||       |||||||||||||||||||||||||||| ||||||||| |||||    
T  39011795 cccct----------ctttccaatgttatctatttcttccacttacttctttttttcaagactttccttccctttctctcaaaattcgcaaaaaattaag 39011706  T
Q  451 tcttcaacaaaataatannnnnnnagtaagatccatttgggtcctgaataa 501  Q
    |||||||||||||||||       |||||||||||||||||||| ||||||    
T  39011705 tcttcaacaaaataatatttttttagtaagatccatttgggtcccgaataa 39011655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 39012129 - 39011996
Alignment:
Q  17 attccaaattctttgctagtagacttaactatattatagggctttgtttggaagtttggaggaaggga-aatgaaagactttgtgggagagaaatatgcg 115  Q
    |||||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||| || ||| |||| ||||||||||||||||||||||| ||    
T  39012129 attccaaattctttgctagtagacctaactatactataggcctttgtttgggagtttggagaaaaggagaatgtaagactttgtgggagagaaatatacg 39012030  T
Q  116 gaaaaattgagaaactttcatattttttgaaaga 149  Q
    | |||||||||||||||||| |||||||||||||    
T  39012029 ggaaaattgagaaactttcacattttttgaaaga 39011996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 349
Target Start/End: Original strand, 3938151 - 3938242
Alignment:
Q  253 tcccaaactcccaaaaatcctccatcaatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataagtcctccaaa 349  Q
    |||||||||||||||| |||| |  ||||||||||||||||||| |  ||||||| || ||||||    ||||||||||||||||||| || |||||    
T  3938151 tcccaaactcccaaaa-tcctactccaatacaattttttagttccccaaaatgagcagggtttta----tatttcgaagaaaaataagccccccaaa 3938242  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 313
Target Start/End: Complemental strand, 15974372 - 15974341
Alignment:
Q  282 acaattttttagttctctcaaatgaggagagt 313  Q
    ||||||||||||||||||||||||||||||||    
T  15974372 acaattttttagttctctcaaatgaggagagt 15974341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 339
Target Start/End: Complemental strand, 29022676 - 29022598
Alignment:
Q  256 caaactcccaaaaatcctccatcaatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataa 339  Q
    |||| ||||||||| | |||  ||||||||||||||||||| || |||||||||||||||||    ||||| ||||||||||||    
T  29022676 caaattcccaaaaaccgtcctccaatacaattttttagttc-cttaaatgaggagagtttta----tattttgaagaaaaataa 29022598  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 266 - 303
Target Start/End: Original strand, 19338608 - 19338645
Alignment:
Q  266 aaaatcctccatcaatacaattttttagttctctcaaa 303  Q
    |||||||||| |||||||||||||||||||| ||||||    
T  19338608 aaaatcctccttcaatacaattttttagttccctcaaa 19338645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 266 - 356
Target Start/End: Complemental strand, 15803236 - 15803150
Alignment:
Q  266 aaaatcctccatcaatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataagtcctccaaagcccctc 356  Q
    ||||||||||  ||||||||||||||||||| | ||| ||||||| ||||||    ||||| ||||||||||||| |||||||||||||||    
T  15803236 aaaatcctcctccaatacaattttttagttcccccaactgaggagggtttta----tattttgaagaaaaataagccctccaaagcccctc 15803150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 56 - 150
Target Start/End: Complemental strand, 15803434 - 15803337
Alignment:
Q  56 ggctttgtttggaagtttgga-ggaagggaaatgaaagacttt-gtgggagagaaatatgcggaaaaattgagaaa-ctttcatattttttgaaagag 150  Q
    |||||||||||| |||||||| || |||| || ||||| |||| | |||||||||||||  || |||||||||||| |||||| ||||||||||||||    
T  15803434 ggctttgtttgggagtttggaggggaggggaaggaaaggctttggggggagagaaatataggggaaaattgagaaatctttcacattttttgaaagag 15803337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 340
Target Start/End: Original strand, 31584789 - 31584868
Alignment:
Q  256 caaactcccaaaaatcctccatcaatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataag 340  Q
    ||||| ||| |||||||||| |||||| ||||||||||||| | ||||||||||| ||||||    ||||| |||||||||||||    
T  31584789 caaaccccccaaaatcctccttcaatataattttttagttc-cccaaatgaggagggtttta----tattttgaagaaaaataag 31584868  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 278 - 349
Target Start/End: Original strand, 30072107 - 30072173
Alignment:
Q  278 caatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataagtcctccaaa 349  Q
    ||||||||||||| ||||||| |||||||||||  |||||    ||||| ||||||||||||||||||||||    
T  30072107 caatacaattttt-agttctcccaaatgaggaggatttta----tattttgaagaaaaataagtcctccaaa 30072173  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 356
Target Start/End: Original strand, 44954042 - 44954115
Alignment:
Q  278 caatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataagtcctccaaagcccctc 356  Q
    |||||||||||||||||||| | |||||||||| ||||||    ||||| |||||||||||| ||  ||||||||||||    
T  44954042 caatacaattttttagttct-taaaatgaggagggtttta----tattttgaagaaaaataaatctcccaaagcccctc 44954115  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 257 - 358
Target Start/End: Original strand, 1839844 - 1839941
Alignment:
Q  257 aaactcccaaaaatcctccatcaatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataagtcctccaaagcccctc 356  Q
    |||| ||| |||| |||||  ||||||||||||| ||||| | ||||||||||| ||||||    ||||| ||||||||||||| |||||||||||||||    
T  1839844 aaaccccccaaaaccctcctccaatacaatttttaagttcccccaaatgaggagggtttta----tattttgaagaaaaataagccctccaaagcccctc 1839939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 43733144 - 43733197
Alignment:
Q  257 aaactcccaaaaatcctccatcaatacaattttttagttctctcaaatgaggag 310  Q
    ||||||||||||| |||||  ||||||||||||||| ||| |||||||||||||    
T  43733144 aaactcccaaaaaccctcctccaatacaattttttaattccctcaaatgaggag 43733197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 12506225 - 12506278
Alignment:
Q  262 cccaaaaatcctccatcaatacaattttttagttctctcaaatgaggagagttt 315  Q
    |||||||||||| |  ||||||||||||||||||| | ||||||||||| ||||    
T  12506225 cccaaaaatccttctccaatacaattttttagttcccccaaatgaggagggttt 12506278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 2474799 - 2474843
Alignment:
Q  266 aaaatcctccatcaatacaattttttagttctctcaaatgaggag 310  Q
    ||||||||||  ||||||||||||| ||||||| |||||||||||    
T  2474799 aaaatcctcccacaatacaatttttaagttctcccaaatgaggag 2474843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 10589865 - 10589821
Alignment:
Q  253 tcccaaactcccaaaaatcctccatcaatacaattttttagttct 297  Q
    |||||||| ||| ||||||||||  ||||||||||||||||||||    
T  10589865 tcccaaaccccccaaaatcctcctccaatacaattttttagttct 10589821  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 42650697 - 42650597
Alignment:
Q  253 tcccaaactcccaaaaatcctccatcaatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataagtcctccaaagcc 352  Q
    ||||||||  || |||| |||||  ||||||||||||||||||| | ||||||||||| ||||||    ||||| ||||||||||||  || ||||||||    
T  42650697 tcccaaacctcccaaaaccctcctccaatacaattttttagttcccccaaatgaggagggtttta----tattttgaagaaaaataaaacccccaaagcc 42650602  T
Q  353 cctct 357  Q
    |||||    
T  42650601 cctct 42650597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 344
Target Start/End: Original strand, 4442006 - 4442086
Alignment:
Q  260 ctcccaaaaatcctccatcaatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataagtcct 344  Q
    |||||||||| ||||   |||||||||||| ||| || ||||||||||||| ||||||    ||||| |||||||||||||||||    
T  4442006 ctcccaaaaaccctcttccaatacaattttgtagctccctcaaatgaggagggtttta----tattttgaagaaaaataagtcct 4442086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 339
Target Start/End: Original strand, 46669991 - 46670047
Alignment:
Q  279 aatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataa 339  Q
    |||||||||||||||||| ||||||||||||| ||||||    ||||| ||||||||||||    
T  46669991 aatacaattttttagttccctcaaatgaggagggtttta----tattttgaagaaaaataa 46670047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 262 - 308
Target Start/End: Complemental strand, 45971612 - 45971566
Alignment:
Q  262 cccaaaaatcctccatcaatacaattttttagttctctcaaatgagg 308  Q
    ||||||||||||||  ||||||||||||||||||| | |||||||||    
T  45971612 cccaaaaatcctcctccaatacaattttttagttcccccaaatgagg 45971566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 356
Target Start/End: Original strand, 52430600 - 52430674
Alignment:
Q  278 caatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataagtcctccaaagcccctc 356  Q
    ||||| ||||||||||||  |  |||||||||||||||||    ||||| |||||||||||||||||| |||| |||||    
T  52430600 caatataattttttagtttccctaaatgaggagagtttta----tattttgaagaaaaataagtcctctaaagtccctc 52430674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 339
Target Start/End: Original strand, 30301959 - 30302025
Alignment:
Q  268 aatcctccatcaatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataa 339  Q
    ||||||||  |||||||||||||||||| |||||||||||||||||||||    ||||| ||||||||||||    
T  30301959 aatcctcctccaatacaattttttagtt-tctcaaatgaggagagtttta----tattttgaagaaaaataa 30302025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 266 - 316
Target Start/End: Complemental strand, 43741753 - 43741703
Alignment:
Q  266 aaaatcctccatcaatacaattttttagttctctcaaatgaggagagtttt 316  Q
    |||||||||| | |||||||||||| ||||||| |||||||||||||||||    
T  43741753 aaaatcctcctttaatacaatttttgagttctcccaaatgaggagagtttt 43741703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 353
Target Start/End: Original strand, 31180012 - 31180081
Alignment:
Q  278 caatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataagtcctccaaagccc 353  Q
    ||||||||||||||||| |||  |||||||||||||||||    ||||| ||||||||||||| || |||||||||    
T  31180012 caatacaattttttagtcctc--aaatgaggagagtttta----tattttgaagaaaaataagacccccaaagccc 31180081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 356
Target Start/End: Complemental strand, 1277974 - 1277900
Alignment:
Q  278 caatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataagtcctccaaagcccctc 356  Q
    ||||||||||||||||||| |  |||||||||  ||||||    ||||| ||||||||||||| || ||||||||||||    
T  1277974 caatacaattttttagttccccaaaatgaggatggtttta----tattttgaagaaaaataagccccccaaagcccctc 1277900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 266 - 355
Target Start/End: Original strand, 23772572 - 23772657
Alignment:
Q  266 aaaatcctccatcaatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataagtcctccaaagcccct 355  Q
    |||||||||| | |||| ||||||||| || || |||||||||||| |||||    ||||| |||||||||||||||  |||||| ||||    
T  23772572 aaaatcctcccttaatataattttttaattttcccaaatgaggagattttta----tattttgaagaaaaataagtctcccaaagtccct 23772657  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 278 - 356
Target Start/End: Original strand, 4089442 - 4089515
Alignment:
Q  278 caatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataagtcctccaaagcccctc 356  Q
    ||||||||||| ||||||| ||||||||||||||||||||    ||||| ||||||||||||| || | ||||||||||    
T  4089442 caatacaatttcttagttc-ctcaaatgaggagagtttta----tattttgaagaaaaataagcccccgaaagcccctc 4089515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 340
Target Start/End: Complemental strand, 33184232 - 33184172
Alignment:
Q  279 aatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataag 340  Q
    |||||||||||||||||| ||||||||||||| ||||||   ||| || |||||||||||||    
T  33184232 aatacaattttttagttc-ctcaaatgaggagggttttatgtttaatttgaagaaaaataag 33184172  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 45570972 - 45571025
Alignment:
Q  262 cccaaaaatcctccatcaatacaattttttagttctctcaaatgaggagagttt 315  Q
    ||||||||||||||  ||||||||||||||||||| | ||||||||||| ||||    
T  45570972 cccaaaaatcctcctccaatacaattttttagttcccccaaatgaggagggttt 45571025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 353
Target Start/End: Complemental strand, 53888548 - 53888452
Alignment:
Q  253 tcccaaactcccaaaaatcctccatcaatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataagtcctccaaagcc 352  Q
    |||||||| ||| |||| |||||  ||||||||||||||||||| | ||||  ||||| ||||||    ||||| ||||||||||||| || ||||||||    
T  53888548 tcccaaaccccccaaaaccctcctccaatacaattttttagttcccccaaacaaggagggtttta----tattttgaagaaaaataagccccccaaagcc 53888453  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 150
Target Start/End: Complemental strand, 40674336 - 40674272
Alignment:
Q  88 gaaagactttgtg-ggagagaaatatgcggaaaaattgagaaa-ctttcatattttttgaaagag 150  Q
    ||||||||||| | ||||||| ||||  ||||||||||||||| |||||| ||||||||||||||    
T  40674336 gaaagactttgggaggagagatatatatggaaaaattgagaaacctttcacattttttgaaagag 40674272  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 51 - 150
Target Start/End: Original strand, 25561133 - 25561234
Alignment:
Q  51 tatagggctttgtttggaagtttggag-gaagggaaatgaaagactttgtgggagagaaatatgcggaaaaattgagaaa-ctttcatattttttgaaag 148  Q
    |||| |||||||||||  |||||| || ||| || |||||||| ||||| |||||||||||||   | |||||||||||| |||||| ||||||||||||    
T  25561133 tataaggctttgtttgcgagtttgtagcgaaagggaatgaaaggctttgggggagagaaatatagaggaaaattgagaaatctttcacattttttgaaag 25561232  T
Q  149 ag 150  Q
    ||    
T  25561233 ag 25561234  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 56 - 150
Target Start/End: Original strand, 49102794 - 49102891
Alignment:
Q  56 ggctttgtttggaagtttggagga-agggaaatgaaagactttgtggg-agagaaatatgcggaaaaattgagaaa-ctttcatattttttgaaagag 150  Q
    |||||||||||| ||||||||||  |||| || ||| | ||||| ||| ||||||||||  ||||||||||||||| |||||| ||||||||||||||    
T  49102794 ggctttgtttgggagtttggaggggaggggaaggaagggctttggggggagagaaatatagggaaaaattgagaaatctttcacattttttgaaagag 49102891  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 278 - 356
Target Start/End: Original strand, 49102997 - 49103071
Alignment:
Q  278 caatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataagtcctccaaagcccctc 356  Q
    ||||||||||||||||||| | ||||||||||| ||||||    | ||| ||||||||||||  |||||||||||||||    
T  49102997 caatacaattttttagttcccccaaatgaggagggtttta----tgttttgaagaaaaataaaccctccaaagcccctc 49103071  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 59 - 150
Target Start/End: Complemental strand, 6538245 - 6538152
Alignment:
Q  59 tttgtttggaagtttggagg--aagggaaatgaaagactttgtgggagagaaatatgcggaaaaattgagaaa-ctttcatattttttgaaagag 150  Q
    |||||||||||||||| |||  |||||||  |||||||||||  ||||| |||||   || |||||||||||| |||||||||||||||||||||    
T  6538245 tttgtttggaagtttgaaggggaagggaag-gaaagactttgaaggagataaatacaggggaaaattgagaaatctttcatattttttgaaagag 6538152  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 316
Target Start/End: Original strand, 37649640 - 37649699
Alignment:
Q  257 aaactcccaaaaatcctccatcaatacaattttttagttctctcaaatgaggagagtttt 316  Q
    ||||||||||||| |||||  |||||||||||||||||||   ||||||||||| |||||    
T  37649640 aaactcccaaaaaccctcctccaatacaattttttagttcctccaaatgaggagggtttt 37649699  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 278 - 317
Target Start/End: Original strand, 43036358 - 43036397
Alignment:
Q  278 caatacaattttttagttctctcaaatgaggagagtttta 317  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  43036358 caatacaattttttagttctcccaaatgaggagggtttta 43036397  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 257 - 352
Target Start/End: Complemental strand, 17556724 - 17556633
Alignment:
Q  257 aaactcccaaaaatcctccatcaatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataagtcctccaaagcc 352  Q
    |||| ||| |||| |||||  ||||| ||||||||||||| | ||||||||||| ||||||    ||||| ||||||||||||| || ||||||||    
T  17556724 aaaccccccaaaaccctcctccaatagaattttttagttcccccaaatgaggagggtttta----tattttgaagaaaaataagccccccaaagcc 17556633  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 278 - 356
Target Start/End: Original strand, 35619549 - 35619623
Alignment:
Q  278 caatacaattttttagttctctcaaatgaggagagttttagacttatttcgaagaaaaataagtcctccaaagcccctc 356  Q
    ||||||||||||||||||| |||| ||||  |||||||||    ||||| ||||||||||||| |  ||||||||||||    
T  35619549 caatacaattttttagttccctcagatgattagagtttta----tattttgaagaaaaataagcctcccaaagcccctc 35619623  T

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