View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19915_low_11 (Length: 513)

Name: NF19915_low_11
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19915_low_11
NF19915_low_11
[»] chr8 (4 HSPs)
chr8 (20-227)||(27227014-27227221)
chr8 (324-505)||(27227272-27227453)
chr8 (372-505)||(27223129-27223262)
chr8 (20-117)||(27222148-27222245)
[»] chr1 (8 HSPs)
chr1 (401-505)||(48655786-48655890)
chr1 (393-505)||(48666354-48666466)
chr1 (398-505)||(48652311-48652418)
chr1 (395-505)||(48628113-48628223)
chr1 (393-505)||(48584528-48584640)
chr1 (393-505)||(48660762-48660874)
chr1 (393-441)||(11546417-11546465)
chr1 (397-441)||(48619101-48619145)
[»] chr3 (1 HSPs)
chr3 (393-496)||(19666402-19666505)


Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 20 - 227
Target Start/End: Original strand, 27227014 - 27227221
Alignment:
Q  20 atggaattgcttgactccatggaagacgttccaagtaagttttacaataatgcattagtgaagtttaaagataaggattgtagacttatgtttattaacg 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||    
T  27227014 atggaattgcttgactccatggaagacgttccaagtaagttttacaataatgcgttggtgaagtttaaagataaggattggagacttatgtttattaacg 27227113  T
Q  120 cgtcacgtcatagtttctaacgataacgttaacatatggactattttgaccgaattttcacaatttaagggatgtatttaccaatatagaaaattcagaa 219  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27227114 cgtcatgtcatagtttctaacgataacgttaacatatggactattttgaccgaattttcacaatttaagggatgtatttaccaatatagaaaattcagaa 27227213  T
Q  220 aatacttt 227  Q
    | ||||||    
T  27227214 attacttt 27227221  T

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Target: chr8; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 324 - 505
Target Start/End: Original strand, 27227272 - 27227453
Alignment:
Q  324 gggcatgtatttcatacaccatggacaaggcacataatcaagacaacttattacatcttttgaatcgtgtcttaatgtcttccataaatgcatcaatatg 423  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27227272 gggcatgtatttcgtacaccatggacaaggcacataatcaagacaacttattacatcttttgaatcgtgtcttaatgtcttccataaatgcatcaatatg 27227371  T
Q  424 ccgatcagaggaaccacctaccgcaactgcagcctccgctgccttcttccacttgattgtgttttgcttcaacatctctgct 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27227372 ccgatcagaggaaccacctaccgcaactgcagcctccgctgccttcttccacttgattgtgttttgcttcaacatctctgct 27227453  T

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Target: chr8; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 372 - 505
Target Start/End: Original strand, 27223129 - 27223262
Alignment:
Q  372 tattacatcttttgaatcgtgtcttaatgtcttccataaatgcatcaatatgccgatcagaggaaccacctaccgcaactgcagcctccgctgccttctt 471  Q
    ||||| ||||||||||||||| |||||||||||||||||||||||||| |||  |||||||||| |||||||  ||||| |||||||| |||||||||||    
T  27223129 tattatatcttttgaatcgtgccttaatgtcttccataaatgcatcaagatgttgatcagaggatccacctatggcaacagcagcctctgctgccttctt 27223228  T
Q  472 ccacttgattgtgttttgcttcaacatctctgct 505  Q
    ||||||||||| |||||||||||||  |||||||    
T  27223229 ccacttgattgcgttttgcttcaactcctctgct 27223262  T

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Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 20 - 117
Target Start/End: Original strand, 27222148 - 27222245
Alignment:
Q  20 atggaattgcttgactccatggaagacgttccaagtaagttttacaataatgcattagtgaagtttaaagataaggattgtagacttatgtttattaa 117  Q
    ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||| ||||| |||||| || |||| || |||||||||||||||||    
T  27222148 atggaattgctcgactctatggaagacgttcctagtaagttttacaataatgcattggtgaaatttaaaaatgaggactggagacttatgtttattaa 27222245  T

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Target: chr1 (Bit Score: 49; Significance: 8e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 401 - 505
Target Start/End: Original strand, 48655786 - 48655890
Alignment:
Q  401 tcttccataaatgcatcaatatgccgatcagaggaaccacctaccgcaactgcagcctccgctgccttcttccacttgattgtgttttgcttcaacatct 500  Q
    ||||| ||||||||||||| ||  || || ||||| |||||||| ||||||||| |||||||||||||||||||||||||||  |||| |||||||  ||    
T  48655786 tcttcgataaatgcatcaagatatcggtcggaggatccacctacggcaactgcatcctccgctgccttcttccacttgattgcatttttcttcaactcct 48655885  T
Q  501 ctgct 505  Q
    |||||    
T  48655886 ctgct 48655890  T

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Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 393 - 505
Target Start/End: Original strand, 48666354 - 48666466
Alignment:
Q  393 tcttaatgtcttccataaatgcatcaatatgccgatcagaggaaccacctaccgcaactgcagcctccgctgccttcttccacttgattgtgttttgctt 492  Q
    ||||||||||||||||||||||||||| ||| || || ||||||||||| ||||| |||||  ||||||| ||||| ||| ||||| |||  |||| |||    
T  48666354 tcttaatgtcttccataaatgcatcaagatgtcggtccgaggaaccaccaaccgccactgcttcctccgccgcctttttcaacttggttgcatttttctt 48666453  T
Q  493 caacatctctgct 505  Q
    |||| ||||||||    
T  48666454 caacgtctctgct 48666466  T

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Target: chr1; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 398 - 505
Target Start/End: Original strand, 48652311 - 48652418
Alignment:
Q  398 atgtcttccataaatgcatcaatatgccgatcagaggaaccacctaccgcaactgcagcctccgctgccttcttccacttgattgtgttttgcttcaaca 497  Q
    ||||||| |||||||||||||| |||| ||||||| || |||||||  ||||| ||| |||||||||| ||||||||||||||||  |||| |||||||     
T  48652311 atgtcttgcataaatgcatcaagatgcagatcagatgatccacctatggcaaccgcatcctccgctgctttcttccacttgattgcatttttcttcaact 48652410  T
Q  498 tctctgct 505  Q
     |||||||    
T  48652411 cctctgct 48652418  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 395 - 505
Target Start/End: Original strand, 48628113 - 48628223
Alignment:
Q  395 ttaatgtcttccataaatgcatcaatatgccgatcagaggaaccacctaccgcaactgcagcctccgctgccttcttccacttgattgtgttttgcttca 494  Q
    ||||||||||||||||||||||||| || || ||||||||| ||||| || || |||||  |||| ||  ||||||||||||| ||||  |||| |||||    
T  48628113 ttaatgtcttccataaatgcatcaagattccaatcagaggatccaccaacggccactgcttcctctgcctccttcttccacttcattgcatttttcttca 48628212  T
Q  495 acatctctgct 505  Q
    ||  |||||||    
T  48628213 actcctctgct 48628223  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 505
Target Start/End: Original strand, 48584528 - 48584640
Alignment:
Q  393 tcttaatgtcttccataaatgcatcaatatgccgatcagaggaaccacctaccgcaactgcagcctccgctgccttcttccacttgattgtgttttgctt 492  Q
    |||||||||||||||||||  |||||| || |||||||||||| ||||| || || |  ||  |||||||   ||||||||||||| |||  ||||||||    
T  48584528 tcttaatgtcttccataaactcatcaagattccgatcagaggatccaccaacggccaaagcttcctccgccttcttcttccacttgtttgcattttgctt 48584627  T
Q  493 caacatctctgct 505  Q
    |||| ||||||||    
T  48584628 caacttctctgct 48584640  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 393 - 505
Target Start/End: Original strand, 48660762 - 48660874
Alignment:
Q  393 tcttaatgtcttccataaatgcatcaatatgccgatcagaggaaccacctaccgcaactgcagcctccgctgccttcttccacttgattgtgttttgctt 492  Q
    ||||||||||||  ||||||||||||| ||| || || ||||||||||| || || |  ||| |||| |||||| |||||||||| ||||  ||||| ||    
T  48660762 tcttaatgtcttggataaatgcatcaagatgtcggtccgaggaaccaccgactgccatcgcatcctctgctgccgtcttccacttcattgcattttgttt 48660861  T
Q  493 caacatctctgct 505  Q
    |||| ||||||||    
T  48660862 caacctctctgct 48660874  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 441
Target Start/End: Original strand, 11546417 - 11546465
Alignment:
Q  393 tcttaatgtcttccataaatgcatcaatatgccgatcagaggaaccacc 441  Q
    ||||||||||||||| |||| |||||| || |||||||||||| |||||    
T  11546417 tcttaatgtcttccaaaaattcatcaagattccgatcagaggatccacc 11546465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 397 - 441
Target Start/End: Complemental strand, 48619145 - 48619101
Alignment:
Q  397 aatgtcttccataaatgcatcaatatgccgatcagaggaaccacc 441  Q
    |||||||||||||||| |||||| || |||||||||||| |||||    
T  48619145 aatgtcttccataaattcatcaagattccgatcagaggatccacc 48619101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 393 - 496
Target Start/End: Complemental strand, 19666505 - 19666402
Alignment:
Q  393 tcttaatgtcttccataaatgcatcaatatgccgatcagaggaaccacctaccgcaactgcagcctccgctgccttcttccacttgattgtgttttgctt 492  Q
    |||||||||||||||||||| |||||| || ||||||||||||||||||   ||| || ||  ||||||| || ||||||||||||||||  ||||||||    
T  19666505 tcttaatgtcttccataaattcatcaagattccgatcagaggaaccaccggtcgccaccgcttcctccgccgctttcttccacttgattgcattttgctt 19666406  T
Q  493 caac 496  Q
    ||||    
T  19666405 caac 19666402  T

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