View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_low_13 (Length: 482)
Name: NF19915_low_13
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 113 - 348
Target Start/End: Complemental strand, 31054542 - 31054307
Alignment:
| Q |
113 |
tgcatcaacttaacttataatctccaaaattaccatcaccgaataatgactagtgatatatcactaaaa-ttatggaaaatcccctataatttggatggt |
211 |
Q |
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| T |
31054542 |
tgcatcaacttaacttataatctccaaaattaccatcaccgaacaatgaccagtgatatatcactaaaaattatggaaaatcccctata-tttggatggt |
31054444 |
T |
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| Q |
212 |
atgatatctctaatggtggactcttgttttatatgtatatattcccatctctcgtgtacaaacactcgatatgggacttttgttttggcaatgttagtaa |
311 |
Q |
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| T |
31054443 |
aagatatctcaaatggtggactcttgttttatatgtatatattcctatctctcgtgtacagacactcgatatgggacttttgttttggcaatgttagtaa |
31054344 |
T |
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| Q |
312 |
aattacttttgctttctttcccaattcctttcatcag |
348 |
Q |
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| T |
31054343 |
aattaattttgctttctttcccaattcctttcatcag |
31054307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Complemental strand, 31054624 - 31054565
Alignment:
| Q |
21 |
attttaaattatgttttaatatattgccattatttgaatgatcgtaaccatggaaattac |
80 |
Q |
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| T |
31054624 |
attttaaattatgttttaatatattgccattattcgaatgactggaactatggaaattac |
31054565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 368 - 453
Target Start/End: Original strand, 53451325 - 53451410
Alignment:
| Q |
368 |
agattggataagaaaatcattcttaccgaaacattaagcagttctggttacttgattaattgttgattcacttccaaaagggaacc |
453 |
Q |
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| T |
53451325 |
agatttgataagaaaataattcttaccgaaccattaagcagttctgggtgcttgattaattgttgattcacttccaaaagggaacc |
53451410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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