View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_low_15 (Length: 460)
Name: NF19915_low_15
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 80 - 449
Target Start/End: Original strand, 28849733 - 28850102
Alignment:
| Q |
80 |
gtttagatgttgtttaataatgataacaaatttgtttgtggactttgattttgcttatgctcaaccaacaagagcnnnnnnnnnnnnnggtaattcaatg |
179 |
Q |
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| T |
28849733 |
gtttagatgttgtttaataatgataacaaatttgtttgtggactttcattttgcttatgcttaaccaacaagagcttttttcatttttggtaattcaatg |
28849832 |
T |
|
| Q |
180 |
gcagataatggcaacaatcatttcttattaaccacattacgtgctcacactcccctatatgacattaattttcctacaaacaaacccaccgaacgtttct |
279 |
Q |
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| T |
28849833 |
gcagataatggcaacaatcatttcttattaatcacattacgtgctcacactcccctatatgacattaatttccctacacacaaactcaccgaacgtttct |
28849932 |
T |
|
| Q |
280 |
ctaatggcctaaacattcatgacataatcagtatgcatttatgaattaatttattattagcttacaagctagtgaaaattgtatatgtaatttatttgct |
379 |
Q |
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| T |
28849933 |
ctaatggcctaaacattcatgacataatcagtatgtgtttatgaattaatttattattagcttacaagctagtgaaaattgtatatgtaatttatttgct |
28850032 |
T |
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| Q |
380 |
taacaatgccgaattgttttgattctagtctctaatttgcatgctttgcttaaagatgagttttgatatt |
449 |
Q |
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| T |
28850033 |
taacaatgccgaattgttttgattctagtctctaatttgcatgctttgcttaaagatgagttttgatatt |
28850102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 28849702 - 28849741
Alignment:
| Q |
20 |
tctcgtacttagccatggctagttctaaagtgtttagatg |
59 |
Q |
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| T |
28849702 |
tctcgtacttagccatgactagttctaaagtgtttagatg |
28849741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 5e-63; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 80 - 444
Target Start/End: Complemental strand, 35372751 - 35372390
Alignment:
| Q |
80 |
gtttagatgttgtttaataatgataacaaatttgtttgtggactttgattttgcttatgctcaaccaacaagagcnnnnnnnnnnnnnggtaattcaatg |
179 |
Q |
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|||||| |||||||||||| ||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| ||| ||||| | |
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| T |
35372751 |
gtttaggtgttgtttaatagtgataacaaatttgtttatggcctttgattttgctcatgctcaaccaacaagagcttttttcgtttttggtgattcacta |
35372652 |
T |
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| Q |
180 |
gcagataatggcaacaatcatttcttattaaccacattacgtgctcacactcccctatatgacattaattttcctacaaacaaacccaccgaacgtttct |
279 |
Q |
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| T |
35372651 |
gcagataatggcaacaatcatttattatttaccacattacgtgctgattttcccccatatggaattgattaccctacacacaaacccaccggacgtttct |
35372552 |
T |
|
| Q |
280 |
ctaatggcctaaacattcatgacataatcagtatgcatttatgaattaatttattattagct----tacaagctagtgaaaattgtatatgtaatttatt |
375 |
Q |
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| T |
35372551 |
ctaatggcctaaatattcctgacataatcagtatgtgt-------ttaacttgttcttaacttaaatacaagctagtgaaaatagtgcatgtaatttact |
35372459 |
T |
|
| Q |
376 |
tgcttaacaatgccgaattgttttgattctagtctctaatttgcatgctttgcttaaagatgagttttg |
444 |
Q |
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| T |
35372458 |
tgcttaacaatgacaaattgttttggttatagtctctaatgtgcatgcattgcttaaagatgagatttg |
35372390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 88 - 449
Target Start/End: Complemental strand, 35378390 - 35378034
Alignment:
| Q |
88 |
gttgtttaataatgataacaaatttgtttgtggactttgattttgcttatgctcaaccaacaagagcnnnnnnnnnnnnnggtaattcaatggcagataa |
187 |
Q |
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| T |
35378390 |
gttgtttaatgttgataacaaatttgtttgtggcctttgattttgctcatgctcaaccaacaagagcttttttcgtttttggtgattcaatagcagataa |
35378291 |
T |
|
| Q |
188 |
tggcaacaatcatttcttattaaccacattacgtgctcacactcccctatatgacattaattttcctacaaacaaacccaccgaacgtttctctaatggc |
287 |
Q |
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|||||||||||||||| |||||||||| |||||| | ||||||| ||||| |||| |||| ||||| ||||||| || | |||||||||||||||| |
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| T |
35378290 |
tggcaacaatcatttcctattaaccactgctcgtgctgatactcccccatatggcattgatttccctacgcacaaacctactggacgtttctctaatggc |
35378191 |
T |
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| Q |
288 |
ctaaacattcatgacataatcagtatgcatttatgaattaatttattattagc----ttacaagctagtgaaaattgtatatgtaatttatttgcttaac |
383 |
Q |
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| T |
35378190 |
ctaaacattcctgatataatcagtatgagt-------ttaatttgttattagcttaattactagctagtgaaaatagtatatgtaatttacttgcttaac |
35378098 |
T |
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| Q |
384 |
aatgccgaattgttttgattctagtctctaatttgcatgctttgcttaaagatgagttttgatatt |
449 |
Q |
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|||| |||| | |||| ||||||| ||| |||||||||| |||| ||||| | ||||||||||| |
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| T |
35378097 |
aatgttgaatcg-tttggttctagt-tctcatttgcatgcattgcataaagtagggttttgatatt |
35378034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 107 - 154
Target Start/End: Complemental strand, 35359446 - 35359399
Alignment:
| Q |
107 |
aaatttgtttgtggactttgattttgcttatgctcaaccaacaagagc |
154 |
Q |
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| T |
35359446 |
aaatttgtttgtgggttttgatttagcttatgctcaaccaaaaagagc |
35359399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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