View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_low_16 (Length: 419)
Name: NF19915_low_16
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 393; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 1 - 401
Target Start/End: Original strand, 35047776 - 35048176
Alignment:
| Q |
1 |
tttttcacaatatttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaacaaccgtgaaatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35047776 |
tttttcacaatatttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaacaaccgtgaaatc |
35047875 |
T |
|
| Q |
101 |
ctcaacaaggccgtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagatttgcacaagttagagtatcttcaagctattatca |
200 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35047876 |
ctcagcaaggccgtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagatttgcacaagttagagtatcttcaagctattatca |
35047975 |
T |
|
| Q |
201 |
aggaaacaatgcgcttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgtaccattggtggatatcatgtgcccgctggtactcg |
300 |
Q |
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| T |
35047976 |
aggaaacaatgcgcttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgtaccattggtggatatcatgtgcccgctggtactcg |
35048075 |
T |
|
| Q |
301 |
tctccttacaaacatttcaaaacttcagcaagatccttttatatattctaatccactagagtttcgaccagagagattcctcacaacacacaaggatatt |
400 |
Q |
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| T |
35048076 |
tctccttacaaacatttcaaaacttcagcaagatccgtttatatattctaatccactagagtttcgaccagagagattcctcacaacacacaaggatatt |
35048175 |
T |
|
| Q |
401 |
g |
401 |
Q |
| |
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| |
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| T |
35048176 |
g |
35048176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 13 - 397
Target Start/End: Original strand, 35026203 - 35026587
Alignment:
| Q |
13 |
tttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaacaaccgtgaaatcctcaacaaggcc |
112 |
Q |
| |
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||||||| || |||||||||| | |||||||||||| || |||||| |||||| |||||| ||||||||| ||||| ||||| |||| ||||| | | |
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| T |
35026203 |
tttgcaggcactaattctagcagctacagacactacagcaggaacattgacttggactctatctttacttcttaacaatcgtgaggtcctaaacaaagtc |
35026302 |
T |
|
| Q |
113 |
gtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagatttgcacaagttagagtatcttcaagctattatcaaggaaacaatgc |
212 |
Q |
| |
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| || |||||||||||||||||||||| |||||||||| ||| || |||||||| ||||| |||||||||||||| |||||||| |||||| ||| |
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| T |
35026303 |
attcatgaattagatacacaaattggtaaggaaaagatggcaatacaaacagatttgacgaagttggagtatcttcaagccattatcaaagaaacattgc |
35026402 |
T |
|
| Q |
213 |
gcttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgtaccattggtggatatcatgtgcccgctggtactcgtctccttacaaa |
312 |
Q |
| |
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| | | ||| | | ||||| ||| ||||||| ||||| | ||| ||||||||||||||||||| || ||||| |||||||| |||||||| || || |
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| T |
35026403 |
gtctatacccaccagcaccactgaatttgcctcacgagtctattgagaattgtaccattggtggataccacgtgccagctggtacgcgtctcctaaccaa |
35026502 |
T |
|
| Q |
313 |
catttcaaaacttcagcaagatccttttatatattctaatccactagagtttcgaccagagagattcctcacaacacacaaggat |
397 |
Q |
| |
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| |||| || ||||| | |||||| | ||||||| |||| | |||||||||||||| |||||||||||||||||||||||| |
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| T |
35026503 |
cctttcgaagcttcaacgagatccaatgttatattcggatccgttggagtttcgaccagaaagattcctcacaacacacaaggat |
35026587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 13 - 397
Target Start/End: Original strand, 35032149 - 35032533
Alignment:
| Q |
13 |
tttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaacaaccgtgaaatcctcaacaaggcc |
112 |
Q |
| |
|
||||||| ||||||||||||| | ||||| ||||| || |||||| || ||| | |||| ||||||||| ||||| | |||| | || ||||| ||| |
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| T |
35032149 |
tttgcaggcattaattctagcggctacagatactaccgcaggaacattgacatggtcactatctttacttcttaacaatcctgaagttctaaacaaagcc |
35032248 |
T |
|
| Q |
113 |
gtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagatttgcacaagttagagtatcttcaagctattatcaaggaaacaatgc |
212 |
Q |
| |
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| ||||||||||||||||||||||||| ||||| |||| ||| ||||||||||| ||||| |||||||| ||||| ||||||||||||||| ||| |
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| T |
35032249 |
attcaagaattagatacacaaattggtatggaaaatatggcaataaaatcagatttggcaaagttggagtatctccaagccattatcaaggaaacattgc |
35032348 |
T |
|
| Q |
213 |
gcttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgtaccattggtggatatcatgtgcccgctggtactcgtctccttacaaa |
312 |
Q |
| |
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| |||| ||| | | ||||| ||| ||||||||||||| | ||| |||||||||||||||||||| || ||||| ||||| || ||||||| || || |
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| T |
35032349 |
gtttgtacccacctggaccactcaatttgcctcatgagtctattgaggattgtaccattggtggataccacgtgccagctggcacgtgtctcctaaccaa |
35032448 |
T |
|
| Q |
313 |
catttcaaaacttcagcaagatccttttatatattctaatccactagagtttcgaccagagagattcctcacaacacacaaggat |
397 |
Q |
| |
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| ||||||||||||| | |||||| | ||||||| |||| | ||||||| |||||||||||| | |||||||||||||||| |
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| T |
35032449 |
cctttcaaaacttcaacgagatccaatattatattcagatccgttggagtttcaaccagagagatttcacacaacacacaaggat |
35032533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 13 - 387
Target Start/End: Original strand, 35040166 - 35040540
Alignment:
| Q |
13 |
tttgcagtcattaattctagctggcacagacactacaacatcaacattaacttgggctctatgtttacttctcaacaaccgtgaaatcctcaacaaggcc |
112 |
Q |
| |
|
||||||| || |||||||||| || ||||||||||| || | ||||| || ||| || | | ||||||||| ||||| | |||| | | ||||| ||| |
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| T |
35040166 |
tttgcaggcactaattctagcaggtacagacactaccgcagcgacattgacctggtctgtttctttacttcttaacaatcctgaagttttaaacaaagcc |
35040265 |
T |
|
| Q |
113 |
gtacaagaattagatacacaaattggtagagaaaagatggtaatggaatcagattt-gcacaagttagagtatcttcaagctattatcaaggaaacaatg |
211 |
Q |
| |
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| ||||||||||||||||||||||||| ||||| |||| ||| ||||||||||| ||| ||||| || ||||| |||| ||||||||||||||| || |
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| T |
35040266 |
attcaagaattagatacacaaattggtatggaaaatatggcaatagaatcagattttgca-aagtttgaatatctcaaagccattatcaaggaaacattg |
35040364 |
T |
|
| Q |
212 |
cgcttgtgtccaaccgtgccactaaatgtgcctcatgagtccactgaagattgtaccattggtggatatcatgtgcccgctggtactcgtctccttacaa |
311 |
Q |
| |
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|| ||| ||| ||| ||||| |||||||||||||||||| ||||||||||||| |||||||||| || ||||| || ||||| |||||| | || | |
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| T |
35040365 |
cgtctgtacccagccgcaccactcgatgtgcctcatgagtccattgaagattgtaccgttggtggataccacgtgccagccggtacgcgtctcataacta |
35040464 |
T |
|
| Q |
312 |
acatttcaaaacttcagcaagatccttttatatattctaatccactagagtttcgaccagagagattcctcacaac |
387 |
Q |
| |
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|| |||| |||||||| | |||||| | ||||||| |||| | ||||||||||||||||||||||| ||||| |
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| T |
35040465 |
acctttcgaaacttcaacgagatccaatgttatattcggatccgcatgagtttcgaccagagagattccttacaac |
35040540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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