View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_low_18 (Length: 411)
Name: NF19915_low_18
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_18 |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 7 - 402
Target Start/End: Original strand, 2744279 - 2744674
Alignment:
| Q |
7 |
gaatttgcctaggtcgtatgcatattttttagggggtctagagcgtatctaatagaatcccagctaacatttgttatcaatcacctccttcacgattgct |
106 |
Q |
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| T |
2744279 |
gaatttgcctaggtcgtatgcatattttttagggggtctagagcgtatctaatagaatcccagctaacatttgttatcaatcacctccttcacgattgct |
2744378 |
T |
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| Q |
107 |
acctttccgttgaagagaacgttgtttctttccaaccaaatgctccaacaagttgcaagcgaaattaaatgggacactcggttagcttttttacctcgca |
206 |
Q |
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| T |
2744379 |
acctttccgttgaagagaacgttgtttctttccaaccaaatgctccaacaagttgcaagccaaattaaatgggacactcggttagcttttttacctcgca |
2744478 |
T |
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| Q |
207 |
aaggatgaacgaagcttagaaaaatatctgctttataactcgcacgatctggagaataccaattgagccaagtaaagatattcttccaaatttccttggc |
306 |
Q |
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| T |
2744479 |
aaggatgaacgaagcttagaaaaatatatgctttataactcgtccgatctgaagaataccaattgagccaagtaaagatagtcttccaaatttccttagc |
2744578 |
T |
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| Q |
307 |
attgtcacaagtaaaaaacaaatgattatgaaattcaatttccgcaaagcaaagacacaactttgttgatgcacatctcttaggacaaccctttgc |
402 |
Q |
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| T |
2744579 |
tttgtcacaagtaaaaaacaaatgattatgaaattcaatttccgcaaagcaaagacacaactttgttgatgcacatctcttaggacaaccttttgc |
2744674 |
T |
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