View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_low_19 (Length: 396)
Name: NF19915_low_19
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_19 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 396
Target Start/End: Original strand, 52578615 - 52578995
Alignment:
| Q |
1 |
atattggttacgcgtggatcatttgtttgaagataaacctcttgaaatacactnnnnnnntcaaccccaacaaacgttctctgaaagagcaatatagaat |
100 |
Q |
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| T |
52578615 |
atattggttacgcgtggatcatttgtttgaagataaacctcttgaaatacactaaaaaaatcaaccccaacaaacgttctctgaaagagcaatatagaat |
52578714 |
T |
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| Q |
101 |
accatattgagagtcatatgatatgatgattaagcatgtgttgaactattgaacaggtgagtgatccttgttgtgttagataggtattatcaagttggaa |
200 |
Q |
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| T |
52578715 |
accatattgag---------------tcattaagcatgtgttgaactattgaacaggtgagtgatccttgttgtgttagataggtattatcaagttggaa |
52578799 |
T |
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| Q |
201 |
gtatatttctaaatttatagatgagaaaaatagtatatgcagctttccattagagatttacttttcagtgacataataataacaacctgaatgggtgatg |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52578800 |
gtatatttctaaatttatagatgagaaacatagtatatgcagctttccattagagatttacttttcagtgacataataataacaacctgaatgggtgatg |
52578899 |
T |
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| Q |
301 |
ctgttccaggtcttgtagtgaaaatgagctgccatcgaccctcaatcaaacttgaatttgtctgcagaacagtagagaatagagattgaccatgtc |
396 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
52578900 |
ctgttccaggtcttgtggtgaaaatgagctgccatcgaccctcaatcaaacttgaatttgtctgcagaacagaagagaatagagattgaccatgtc |
52578995 |
T |
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