View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19915_low_20 (Length: 395)
Name: NF19915_low_20
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_20 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 382
Target Start/End: Complemental strand, 33135652 - 33135284
Alignment:
| Q |
18 |
catatgttagtcaaatcatggactcatgcatcagtattatgcatgtggtgtcctaagcaaacctacaaatcttataaagaaatgacaaagaaatacaaag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33135652 |
catatgttagtcaaatcatggactcatgcatcagtattatgcatgtggtgtcctaagcaaacctacaaatcttataaagaaatgacaaaggaatacaaag |
33135553 |
T |
|
| Q |
118 |
atgagatacatttaaatgatgaatatatccaactaaattatatc-nnnnnnnnnnngttaattctctaaacttttttgtgtcaagcaaactatgttttaa |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33135552 |
atgagatacatttaaatgatgaatatatccaactaaattatatcttttttttttttgttaattctctaaacttttttgtgtcaagcaaactatgttttaa |
33135453 |
T |
|
| Q |
217 |
taagttgagcaatattactgt---nnnnnnnnnntaagttgagcatattgtgacaaaaataataactgagaattaggacacgaagactttgaaagataca |
313 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||| ||||| || |
|
|
| T |
33135452 |
taagttgagcaatattactgtaaaaaaataaaaataagttgagcatattgtgacaaaaacaataattgagaattaggacatgaagactttggaagatgca |
33135353 |
T |
|
| Q |
314 |
cgagggaagatacttgaccacgtgctttcnnnnnnnatacagtggagcatacatgccatggatcccacc |
382 |
Q |
| |
|
|||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
33135352 |
cgagggaagagacttgaccatgtgctttctttttttatacagtggagcatacatgccatggatcccacc |
33135284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 30 - 160
Target Start/End: Complemental strand, 33133067 - 33132937
Alignment:
| Q |
30 |
aaatcatggactcatgcatcagtattatgcatgtggtgtcctaagcaaacctacaaatcttataaagaaatgacaaagaaatacaaagatgagatacatt |
129 |
Q |
| |
|
||||||| |||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
33133067 |
aaatcatagactcatgcagtagtattatgcatgtggtgtcctaagcgaacctacaaatcttataaagaaatgacaaaggaatacaaagatgagatacatt |
33132968 |
T |
|
| Q |
130 |
taaatgatgaatatatccaactaaattatat |
160 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |
|
|
| T |
33132967 |
taaatgatgaatatatcaaactaaattatat |
33132937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 33132721 - 33132662
Alignment:
| Q |
256 |
gcatattgtgacaaaaataataactgagaattaggacacgaagactttgaaagatacacga |
316 |
Q |
| |
|
|||||||||||||||| |||||| || |||| ||||||||||||||||| ||||| ||||| |
|
|
| T |
33132721 |
gcatattgtgacaaaa-taataattgtgaatgaggacacgaagactttggaagatgcacga |
33132662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University