View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19915_low_22 (Length: 391)
Name: NF19915_low_22
Description: NF19915
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19915_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 9776448 - 9776790
Alignment:
| Q |
18 |
cctagcagtacacaaagacggcggaggaagcaccggcagacggtgcacttcatcaggaaaattcagctgtgctttacaacctttcaaacaatatgcagca |
117 |
Q |
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| T |
9776448 |
cctagcagtacacaaagacggcggaggaagcaccggcagacggtgcacttcatcaggaaaattcagctgtgctttacaacctttcaaacaatatgcagca |
9776547 |
T |
|
| Q |
118 |
acatcataagcctttgcagccatctccggcgccggaaaagaccctagccatattcttgacttttttcttggctctctaatctctgacacccattttcccc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9776548 |
acatcataagcctttgcagccatctccggcgccggaaaagaccctagccatattcttgacttttttcttggctctctaatctctgacacccattttcccc |
9776647 |
T |
|
| Q |
218 |
accgccttttcctgacgccgtggaaaaccggatgtctggttccgccacggccagattgggcggtgggattctttgttgttagggtttttactgccacgtc |
317 |
Q |
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| T |
9776648 |
accgccttttcctgacgccgtggaaaaccggatgtctggttccgccacggccagattgggcggcgggattctttgttgttagggtttttactgccacgtc |
9776747 |
T |
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| Q |
318 |
aggtttggttgtgaagttcaaatgttgttgatgctccattcag |
360 |
Q |
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| T |
9776748 |
aggtttggttgtgaagttcaaatgttgttgctgctccattcag |
9776790 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 218
Target Start/End: Complemental strand, 41521749 - 41521694
Alignment:
| Q |
163 |
agccatattcttgacttttttcttggctctctaatctctgacacccattttcccca |
218 |
Q |
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| T |
41521749 |
agccaaattcttgatttttttcttggctctctaatctctgatacccatttgcccca |
41521694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 163 - 218
Target Start/End: Original strand, 16357871 - 16357926
Alignment:
| Q |
163 |
agccatattcttgacttttttcttggctctctaatctctgacacccattttcccca |
218 |
Q |
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||||||||||||||||| ||||||||||| | ||| || || |||||||||||||| |
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| T |
16357871 |
agccatattcttgacttctttcttggctcacgaatttcagatacccattttcccca |
16357926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 160 - 218
Target Start/End: Original strand, 3996430 - 3996488
Alignment:
| Q |
160 |
cctagccatattcttgacttttttcttgg-ctctctaatctctgacacccattttcccca |
218 |
Q |
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| T |
3996430 |
cctagccaaattcttga-ttttttcttgggctctctaatttctgaaacccattttcccca |
3996488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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